SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.14 (Universal genetic code) : 317 aa
 vs  library
 searching f20p525 library

    261 residues in     1 sequences
The best scores are:                              s-w
F20P525, 261 bases, 919 checksum.                  (261) 605

>>F20P525, 261 bases, 919 checksum.                  (261 aa)
Smith-Waterman score: 605;   42.149% identity in 242 aa overlap

               10        20             30               40        
K11J9. MVKETVTVAKTCSHCGHNGHNARTC-----LNGVN-------KASVKLFGVNISSDPIRP
              ....::.::.::::.:::      .: :       :: . :::: ..      
F20P52        MSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKA-IMLFGVRVT------
                      10        20        30         40            

       50          60        70        80        90       100      
K11J9. PEVTA--LRKSLSLGNLDALLANDESNGSGDPIAAVDDTGYHSDGQIHSKKGKTAHEKKK
        :...  .:::.:..::. .   :..    ::   .:: :: ::  .:.. :.. .:.:.
F20P52 -EASSSCFRKSVSMNNLSQF---DQT---PDP-NPTDDGGYASDDVVHAS-GRN-RERKR
          50        60              70         80         90       

        110       120       130       140       150        160     
K11J9. GKPWTEEEHRNFLIGLNKLGKGDWRGIAKSFVSTRTPTQVASHAQKYFIR-LNVNDKRKR
       : :::::::: :: ::.:.::::::::...::.:::::::::::::::.:  : : .:.:
F20P52 GTPWTEEEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQN-RRRR
        100       110       120       130       140       150      

         170          180       190         200       210          
K11J9. RASLFDISLEDQ---KEKERNSQDASTKTPPK--QPITGIQQPVVQGHTQTEIS-NRFQN
       :.:::::.  :.   . ::.: :    .:: .  .:.  :  :.  .. ..... :. ..
F20P52 RSSLFDIT-PDSFIGSSKEEN-Q---LQTPLELIRPVP-IPIPIPPSRKMADLNLNKKKT
         160        170           180        190       200         

      220       230       240       250       260       270        
K11J9. -LSMEYMPIYQPIPPYYNFPPIMYHPNYPMYYANPQVPVRFVHPSGIPVPRHIPIGLPLS
         . :..:.                                                   
F20P52 PATTEMFPLSLNLQRPSSSTSSSSNEQKARGSRASSGFEAMSSNGDSIMGVA        
     210       220       230       240       250       260         

      280       290       300       310       
K11J9. QPSEASNMTNKDGLDLHIGLPPQATGASDLTGHGVIHVK

Library scan:  0:00:00  total CPU time:  0:00:00