SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.13 (Universal genetic code) : 225 aa
 vs  library
 searching csc3ollpr library

    144 residues in     1 sequences
The best scores are:                              s-w
CSC3OLLPR, 144 bases, 227D checksum.               (144) 290

>>CSC3OLLPR, 144 bases, 227D checksum.               (144 aa)
Smith-Waterman score: 290;   42.609% identity in 115 aa overlap

                           10           20        30        40     
K11J9.             MHFFGTKDKAPIYAGIAVV---SFMILTGLTFAGTAVALTVMIPVLVV
                              . :. ::.   :...:.:::.:::..:::.  :.::.
CSC3OL MAEHYQPLQQTQLQSRQPRSHQVVKAATAVTAGGSLLVLSGLTMAGTVIALTIATPLLVI
               10        20        30        40        50        60

          50        60        70        80        90       100     
K11J9. LSPILVPAVITSSFLATGFLASGSLGALGIALLIWLYKKEEYSRATLHARGGRPDGPNKL
        ::.::::::: :.:  ::::::..:. .:..: :.:.   :  .:    ::.: : ..:
CSC3OL CSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYR---Y--VT----GGHPPGADQL
               70        80        90            100           110 

          110       120       130       140       150       160    
K11J9. AESG-KQSGGDNPLKEDKPPERDKLPRKDKPSKEDNLLKGDKPVEEDKLPAEEEKPPQKD
        ..  : .:    .. :.                                          
CSC3OL EQARMKLAGKAREMR-DRAEQFGQQQITGSQQGS                          
             120        130       140                              

          170       180       190       200       210       220    
K11J9. KPAEGHKPPQKDKPAEGDKPVEEDKPPQKDKPAEGDKHVEEDMPLGGVEHLSIPEIPKVL

        
K11J9. Y

Library scan:  0:00:00  total CPU time:  0:00:00