SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.12 (Universal genetic code) : 241 aa
 vs  library
 searching tobby4c library

    291 residues in     1 sequences
The best scores are:                              s-w
TOBBY4C, 291 bases, 1667 checksum.                 (291) 615

>>TOBBY4C, 291 bases, 1667 checksum.                 (291 aa)
Smith-Waterman score: 615;   43.277% identity in 238 aa overlap

                                                               10  
K11J9.                                                 MATKQEALAIDF
                                                                   
TOBBY4 MASPQENCTTLDLIRQHLLDDNVFMEHYCPQPILYSQSSSSSESLNSIASELNNETFSFE
               10        20        30        40        50        60

             20        30           40            50        60     
K11J9. ISQHLLTDFVSMETDHPSLFTN---QLHNFHSETGPRT----ITNQSPKPNSTLNQRKPP
                 : . :  :.:.:   .. .:. :: : .    :...::: ......::: 
TOBBY4 PTLKYADTAQSSNLDISSFFNNSKTEFDSFEFETKPNVSAARISSNSPK-QTSFKERKPS
               70        80        90       100        110         

          70           80         90       100       110       120 
K11J9. LPNLSV---SRTVSTKTEK-EEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTA
       : :...   .. :  :.:    :..::::::.:::::.::::::::.:: :.::::.:::
TOBBY4 L-NIAIPMKQQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTA
     120        130       140       150       160       170        

             130       140       150       160          170        
K11J9. VEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVI---GLGKRKRDKGSPPEEEK
       .::..:::.:::.::: :::.::::.: .. .  ..: ..   . : ::: . .  .:: 
TOBBY4 IEAAKAYDRAAFKLRGSKAIVNFPLEV-ANFKQQDNE-ILQPANSG-RKRMRETE-NEEI
      180       190       200        210        220        230     

      180       190       200         210        220       230     
K11J9. AARVKVEEEESNTSETTEAEVEPVV--PLTPSSWMGFWDVGA-GDGIFSIPPLSPTSPN-
       . . .:..::         .: :..  ::::::: ..:. :  : ::: .::::: ::. 
TOBBY4 VIKKEVKREE---------RV-PAAAAPLTPSSWSAIWE-GEDGKGIFEVPPLSPLSPHM
          240                 250       260        270       280   

            240 
K11J9. -FS-VISVT
        .: .. . 
TOBBY4 AYSQLVMI 
           290  

Library scan:  0:00:00  total CPU time:  0:00:00