SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.11 (Universal genetic code) : 201 aa
 vs  library
 searching tobby4c library

    291 residues in     1 sequences
The best scores are:                              s-w
TOBBY4C, 291 bases, 1667 checksum.                 (291) 455

>>TOBBY4C, 291 bases, 1667 checksum.                 (291 aa)
Smith-Waterman score: 455;   36.752% identity in 234 aa overlap

                10        20        30             40              
K11J9. METFEES-SDLDVIQKHLFEDLMIPDGFIEDF-----VFDDTAFVS-GLWSL------EP
       : . .:. . ::.:..::..:  .   :.: .     ......  : .: :.      : 
TOBBY4 MASPQENCTTLDLIRQHLLDD-NV---FMEHYCPQPILYSQSSSSSESLNSIASELNNET
               10        20            30        40        50      

          50          60            70          80          90     
K11J9. FN--PVPKLEPS--SPVLDPDSYVQ----EI--LQMEAESSSSSS--TTTSPEVETVSNR
       :.  :. :   .  :  :: .:. .    :.  ...:.. . :..  ...::.  . ..:
TOBBY4 FSFEPTLKYADTAQSSNLDISSFFNNSKTEFDSFEFETKPNVSAARISSNSPKQTSFKER
         60        70        80        90       100       110      

                      100           110       120       130        
K11J9. K---------K----TKRFE----ETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFE
       :         :    ... :    : .::::::.::::::::::::: .::.:.:::::.
TOBBY4 KPSLNIAIPMKQQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFD
        120       130       140       150       160       170      

      140       150       160       170              180        190
K11J9. SDIDAARAYDYAAFKLRGRKAVLNFPLDAGKY---DA----PVNSCRKR-RRTDVPQPQG
       . :.::.::: ::::::: ::..::::.....   :     :.:: ::: :.:.      
TOBBY4 TAIEAAKAYDRAAFKLRGSKAIVNFPLEVANFKQQDNEILQPANSGRKRMRETENEEIVI
        180       190       200       210       220       230      

              200                                             
K11J9. TTTSTSSSSSN                                            
                                                              
TOBBY4 KKEVKREERVPAAAAPLTPSSWSAIWEGEDGKGIFEVPPLSPLSPHMAYSQLVMI
        240       250       260       270       280       290 

Library scan:  0:00:00  total CPU time:  0:00:00