SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >K11J9.10 (Universal genetic code) : 522 aa
 vs  library
 searching s68243 library

    436 residues in     1 sequences
The best scores are:                              s-w
S68243, 436 bases, 543 checksum.                   (436) 848

>>S68243, 436 bases, 543 checksum.                   (436 aa)
Smith-Waterman score: 848;   35.256% identity in 468 aa overlap

               10        20        30        40        50        60
K11J9. MEASISFLGSTKPNISLFNPSSNVLPRRDFPLPALKLKKVSVLPRILHQKRLIRAQCSDG

               70        80        90         100       110        
K11J9. FKPEEDDGFVLEDVPHLTKFLPDLPSYPNP-LK-ESQAYAIVKRTFVSSEDVV-AQNI--
                      :.  ..:  :. : : :: :  .   .   ..: :  : ....  
S68243         MSVKRRDHI--LIPKNPDAPLPSLKIEEVGECTIDNIYASPEPFVNGMTMKL
                         10        20        30        40        50

           120          130       140       150       160       170
K11J9. -VVQK-GSKR--G-VHFRRAGPRERVYFRSDEVKACIVTCGGLCPGINTVIREIVCGLNN
        .:.. : .:  : :..  ::: :....  . .:. ::::::::::.:.::: .: .: :
S68243 SAVKNHGIERDSGEVEL--AGPMEKIFYNPETTKVAIVTCGGLCPGLNNVIRGLVLNLYN
               60          70        80        90       100        

              180       190         200       210       220        
K11J9. MYGVNNILGIQGGYRGFYSK--NTMNLTPKVVNDIHKRGGTFLQTSRGGHDT---AK-IV
        : ::::.:.. ::.:.  .  ... :::..:.:::..::..: ::::...    :. ..
S68243 AYHVNNIFGLRWGYEGLVPELSEVQRLTPEIVSDIHQKGGSILGTSRGAQSPEVMAQFLI
      110       120       130       140       150       160        

                     230          240       250       260       270
K11J9. DN---IQ-----D---RG---INQEVERRGLQVAVSGIPKTIDNDIAVIDKSFGFDTAVE
       ::   :      :   ::   ::.:..:: . ..: ::::::::::   :..:::.::: 
S68243 DNNFNILFTLGGDGTLRGANAINKELRRRKVPITVVGIPKTIDNDICYTDSTFGFQTAVG
      170       180       190       200       210       220        

              280       290       300             310              
K11J9. EAQRAINAAHVEVESVENGVGIVKLMGRYSESPFF-L-----EGKGGLF-----------
        .:.::::.: :..:..::.:::.::::  .. :. :     .: ..:            
S68243 LSQEAINAVHSEAKSAKNGIGIVRLMGR--DAGFIALYASLANGDANLVLIPEIDIPITQ
      230       240       250         260       270       280      

             320       330       340       350       360       370 
K11J9. --EFIEERLKENRHMVIVIAEGAGQDYVAQSMRASETKDASGNRLLLDVGLWLTQQIKVL
         ::. .:.  . :.:::.:::: :.   ...  . : : :::  .:    :  ..:. :
S68243 ICEFVGKRIMSKGHVVIVVAEGALQNQKPKDLDLG-T-DKSGN--ILH---W--DSINYL
        290       300       310       320           330            

             380       390       400       410       420       430 
K11J9. VETRKLRKWFLYVFPQTFKMNLVTTMLQDHFTNVRKMMINMKYIDPTYMIRAIPSNASDN
        ..  . :   :     .:    .  ...: :        .:..::.::::. : .:.: 
S68243 RDS--ITK---Y-----LK----SIGIEEH-T--------IKFVDPSYMIRSAPCSAADA
       340                     350                360       370    

             440       450       460       470       480        490
K11J9. VYCTLLAQSAVHGAMAGYSGFTVGPVNSRHAYIPISQVTEVTNTVKLTDR-MWARLLAST
        .:  ::..::: :::: .:...   ..  . .::....   . :. ::  ... .... 
S68243 HFCMCLANAAVHVAMAGKTGLVICHHHNNFVSVPIDRTSYYIKRVN-TDGPLYT-MMTAI
          380       390       400       410       420         430  

              500       510       520  
K11J9. NQPSFLTGEGALQNVIDMETQEKIDNMKISSI
       ..:.                            
S68243 EKPK                            
                                       

Library scan:  0:00:00  total CPU time:  0:00:01