SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSL1.P2 (Universal genetic code) : 35 aa
 vs  library
 searching atfca24 library

    658 residues in     1 sequences
The best scores are:                              s-w
ATFCA24, 658 bases, 1603 checksum.                 (658) 201

>>ATFCA24, 658 bases, 1603 checksum.                 (658 aa)
Smith-Waterman score: 201;   62.857% identity in 35 aa overlap

ATFCA2 MDTPQKSITQIGTPISKSRFEDSPVFNYINSLSPIRPVRSIPNPNQFSSLNFTSPPSVFT
               10        20        30        40        50        60

ATFCA2 SPHLTSSHKESRFFKTHNSSSSDPTNSVESQEDESTSHEEVPAEGEDTKGLNIDDCMREE
               70        80        90       100       110       120

ATFCA2 ASVETNLDDSVASPCGGNTTDLSLVPYAPTRGEDGSCEDNGMELQKMHDNVQGKTETPDW
              130       140       150       160       170       180

ATFCA2 ESLIADASELLIFDSPDASEAFRCFMMQRASNSEARFRNGVEKQTMQHDSNKEPESANAI
              190       200       210       220       230       240

ATFCA2 PYEVNSGVISQAVSLLHRGIRRRCLDFEMPGNKQTSSENNTAACESSSRCVVPSIGLHLN
              250       260       270       280       290       300

ATFCA2 AILMSSKDCKTNVTQDYSCSANIQVGLQRSISTLQDSLDQTENEIREDADQDVPVEPALQ
              310       320       330       340       350       360

ATFCA2 ELNLSSPKKKSYCECFAAGVYCIEPCSCIDCFNKPIHEDVVLATRKQIESRNPLAFAPKV
              370       380       390       400       410       420

                                       10        20        30      
MSL1.P                         RGCKCKRTRCLKKYCECFQANLLCSDNCKCINCKN 
                               :::.::.. ::::::::.:... :: ::.: .::: 
ATFCA2 IRNSDSVQETGDDASKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA
              430       440       450       460       470       480

ATFCA2 FGRKDGSSIDMEAEQEEENETSEKSRTAKSQQNTEVLMRKDMSSALPTTPTPIYRPELVQ
              490       500       510       520       530       540

ATFCA2 LPFSSSKNRMPPPQSLLGGGSSSGIFNSQYLRKPDISLSQSRIEKSFETVAVDGAEQMPE
              550       560       570       580       590       600

ATFCA2 ILIHSPIPNIKSVSPNGKRVSPPHMESSSSGSILGRRNGGRKLILQSIPSFPSLTPQH
              610       620       630       640       650        

Library scan:  0:00:00  total CPU time:  0:00:00