SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSL1.P1 (Universal genetic code) : 172 aa
 vs  library
 searching atfca631 library

    883 residues in     1 sequences
The best scores are:                              s-w
ATFCA631, 883 bases, 153D checksum.                (883) 364

>>ATFCA631, 883 bases, 153D checksum.                (883 aa)
Smith-Waterman score: 364;   31.383% identity in 188 aa overlap

ATFCA6 METNVPEKKILGFPEEMNSTIQFLSVEKTTCRLPVSIKFNIPKKISTKRRRISVEEEEEE
               10        20        30        40        50        60

ATFCA6 EDENKTKLSSWEKVLSSDEILRLREVSRRKYLTDRENKKVEELRDERKDDDDVEGYRFPD
               70        80        90       100       110       120

ATFCA6 AYDQEGCIDQKKRFDVAKERYCERRRSGRVVTEQEAWEDHQAQKARVRFGAKDKKQVVDG
              130       140       150       160       170       180

ATFCA6 YEFVFDDLTGFVEESSEAETGKHRGCYSKTAAEKAREGREFLPIHGYREELLKLIEENQV
              190       200       210       220       230       240

ATFCA6 LVIVGETGSGKTTQIPQYLQEAGYTKRGKIGCTQPRRVAAMSVASRVAQEVGVKLGHEVG
              250       260       270       280       290       300

ATFCA6 YSIRFEDCTSEKTVIKYMTDGMLLRELLIEPKLDSYSVIIIDEAHERTLSTDILFALVKD
              310       320       330       340       350       360

ATFCA6 VAKVRPDLRLIISSATLEAKKFSEYFDSARIYLIPGRRYPVEKLFRKCPEPDYLETVIRT
              370       380       390       400       410       420

ATFCA6 VVQIHQTEAIGDILVFLTGQEEIETVETNLKRRMMDLGTKGSEIIICPIYSNLPTPLQAK
              430       440       450       460       470       480

ATFCA6 VFEPAPKGTRKVVLATNIAETSLTIDGVKYVIDPGYCKINSYNPRTGMESLLVTPISKAS
              490       500       510       520       530       540

ATFCA6 AAQRAGRSGRTGPGKCFRLYNIKDLEPTTIPEIQRANLASVVLTLKSLGIQDVFNFDFMD
              550       560       570       580       590       600

                 10        20        30        40        50        
MSL1.P  PPQ-IIMQALDSLHALISINQHGILTETGAMLSKLPVEQKLGKMVIFSKRYGCFEEVII
        ::.  ...::. :.:: .... : .:..:  . ..::.  :.::.. :..: : .:.: 
ATFCA6 PPPENALLKALELLYALGALDEIGEITKVGERMVEFPVDPMLSKMIVGSEKYKCSKEIIT
              610       620       630       640       650       660

       60                   70        80         90       100      
MSL1.P VAIRMF--GSN------NR---GNGLRYNYRERACD-SDRLSMLFAYESWTESNYSENWC
       .:  :.  :..      :.   ..  :... : . . .:....: .:.:: : ::: .::
ATFCA6 IAA-MLSVGNSVFYRPKNQQVFADKARMDFYEDTENVGDHIALLRVYNSWKEENYSTQWC
               670       680       690       700       710         

        110          120       130       140       150       160   
MSL1.P KRNNMKYYQ---MKLVRDMKRRLKETLEKLQIKIYFKRNDMDVVKKSIISWFFLNSTTLE
        .   :. :   :: .::.. .:   :.:. ...  . ::.:..::.:.. :: .:. :.
ATFCA6 CE---KFIQSKSMKRARDIRDQLLGLLNKIGVELTSNPNDLDAIKKAILAGFFPHSAKLQ
     720          730       740       750       760       770      

           170                                                     
MSL1.P RDGFYKTRK                                                   
       ..: :.  :                                                   
ATFCA6 KNGSYRRVKEPQTVYVHPNSGLFGASPSKWLVYHELVLTTKEYMRHTTEMKPEWLIEIAP
        780       790       800       810       820       830      

ATFCA6 HYYKLKDIEDTRPKKTQRRIEEASTSKVDTNKKTRTSKVDTNKKSKR
        840       850       860       870       880   

Library scan:  0:00:00  total CPU time:  0:00:00