SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSL1.17 (Universal genetic code) : 583 aa
 vs  library
 searching mlu1518139 library

    476 residues in     1 sequences
The best scores are:                              s-w
MLU1518139, 476 bases, 1299 checksum.              (476) 811

>>MLU1518139, 476 bases, 1299 checksum.              (476 aa)
Smith-Waterman score: 811;   34.600% identity in 500 aa overlap

               10        20        30        40        50        60
MSL1.1 MTATTTLKSFNYLSLINHRLNHNSYAILSSPLLPRSHPASTSFSNSGFRFFQSNHLFSSQ

               70        80        90       100       110          
MSL1.1 SGSLMEVFKAAFSEASNSCDRIAIKADGKSYSYGQLTSSALRISKLFLKDDTTNG--GQE
                                                          . .:  :  
MLU151                         MLLASLNPSVVTATDIADAVCVDGVVLSRSGLVGAA
                                       10        20        30      

      120       130        140       150        160       170      
MSL1.1 TKKYEGFGSLKGAR-IGIVAKPSAEFVAGVLGTWFSGGV-AVPLALSYPEAELLHVMNDS
       :.  :  :   ::: ....: :.:  : .. :  ..: : .::.  .   .:  :...::
MLU151 TSVAERVG---GARLVAVLATPTASTVLAITGCLIAG-VPVVPVPADIGVVERRHMLTDS
         40           50        60        70         80        90  

        180       190       200       210       220       230      
MSL1.1 DISLLLSTEDHSETMKTIAAKSGARFHLIPPVVNSTSETVACNQFQDDSFEAEGKFLDDP
         .  :.    ...     : .:   : ::  ... :     :.. . : .:        
MLU151 GAQAWLGPGPSADS-----APDGLP-H-IPVQLDARSW----NRYPEPSPDAT-------
            100            110         120           130           

        240       250       260       270       280       290      
MSL1.1 ALIVYTSGTTGKPKGVVHTHNSINSQVRMLTEAWEYTSADHFLHCLPLHHVHGLFNALFA
       :...::::::: ::::. .. .:  ..  :..::..:. : ..: ::: :::::  .:..
MLU151 AMVIYTSGTTGPPKGVLLSRRAIAVDLDALAQAWQWTADDVLVHGLPLFHVHGLVLGLLG
          140       150       160       170       180       190    

        300       310       320        330       340       350     
MSL1.1 PLYARSLVEFLPKFSVSGIWRRWRESYP-VNDEKTNDSITVFTGVPTMYTRLIQGYEAMD
        :  :  .    .:  .:  .    .:  . .: .. :.  : ::::...::.    : :
MLU151 SL--R--IG--NRFVHTG--KPTPTAYAQACSE-AGGSL-YF-GVPTVWSRLV----A-D
                200         210        220         230             

         360       370       380       390       400       410     
MSL1.1 KEMQDSSAFAARKLRLMMSGSSALPRPVMHQWESITGHRLLERYGMTEFVMAMSNPLRGA
        :   . : : :  ::..:::..:: ::. .   .:::: .:::: :: ....:.   : 
MLU151 -E---AVARALRPARLLVSGSASLPVPVFDRLAHLTGHRPIERYGSTESLITLSTLADGE
          240       250       260       270       280       290    

         420            430                                440     
MSL1.1 RNAGTVGKPLPGVE-----E-------------------------YWNLPEVTKESFTED
       : :: :: :: ::.     :                         : : ::.: :.: ::
MLU151 RRAGWVGLPLAGVQTRLVDESGGPVPYDGETVGRLQVRSPTMFGGYLNRPEATAEAFDED
          300       310       320       330       340       350    

         450       460       470       480       490       500     
MSL1.1 GYFKTGDAGRVDEDGYYVILGRNSADIMKVGGYKLSALEIESTLLEHPTVAECCVLGLTD
       :...:::.. ::  :.. :.::.:.:..:.:::...: ::: .:: :: : :  :.:: :
MLU151 GWYRTGDVAVVDSGGMHRIVGRESVDLIKLGGYRIGAGEIEMALLGHPDVREVAVVGLPD
          360       370       380       390       400       410    

         510        520       530       540       550       560    
MSL1.1 NDYGEAVTAIII-AESAAKKRREDESKPVITLEELCGWAKDKLAPYKLPTRLLIWESLPR
       .: :. ..:... :: :      :        .:: ... ..:. .: : .. . ..:::
MLU151 EDLGQRIVAFVVGAE-AL-----DA-------DELINYVAQQLSIHKRPREVRFVDALPR
          420        430                   440       450       460 

          570       580   
MSL1.1 NAMGKVNKKELKKSLENQE
       :::::: ::.:        
MLU151 NAMGKVLKKQLLFEG    
             470          

Library scan:  0:00:00  total CPU time:  0:00:01