SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSL1.16 (Universal genetic code) : 328 aa
 vs  library
 searching aspg_lupan library

    325 residues in     1 sequences
The best scores are:                              s-w
ASPG_LUPAN, 325 bases, 124E checksum.              (325)1194

>>ASPG_LUPAN, 325 bases, 124E checksum.              (325 aa)
Smith-Waterman score: 1194;   57.357% identity in 333 aa overlap

               10          20        30        40        50        
MSL1.1 MGGWAIAVHGGAGID-P-NLPAERQEEAKQLLTRCLNLGIIALRSNVSAIDVVELVIREL
       ::::.::.::::: : : .:: ::..  .. : .::..:. ::.:.   .::::::.:::
ASPG_L MGGWSIALHGGAG-DIPFSLPPERRQPREEGLRHCLQIGVEALKSQKPPLDVVELVVREL
               10         20        30        40        50         

       60        70        80        90       100       110        
MSL1.1 ETDPLFNSGRGSALTEKGTVEMEASIMDGTKRRCGAVSGITTVKNPISLARLVMDKSPHS
       :.   ::.: ::.::..::::::::::::   .::::::..:: ::::::::::::.:: 
ASPG_L ENIQHFNAGIGSVLTNSGTVEMEASIMDGKTMKCGAVSGLSTVLNPISLARLVMDKTPHI
      60        70        80        90       100       110         

      120       130       140       150       160          170     
MSL1.1 YLAFSDKSSDRSRFNEKGVEIVDNEYFVTDDNVGMLKLAKEANSILFDYR---IP-PMGC
       ::::.  ..: ..  ..::: ::. .:.: .::  :::: ::: .  ::     : :   
ASPG_L YLAFQG-AQDFAK--QQGVETVDSSHFITAENVERLKLAIEANRVQVDYSQYNYPQP--A
     120        130         140       150       160       170      

          180       190       200       210       220       230    
MSL1.1 AGAAATDSPIQMNGLPISIYAPETVGCVVVDGKGHCAAGTSTGGLMNKMMGRIGDSPLIG
          :  . :.  ::   .:    :::::.::..:. :..::::::.:::.:::::.::::
ASPG_L QDDAEKELPLA-NG-DSQIG---TVGCVAVDSHGNLASATSTGGLVNKMVGRIGDTPLIG
          180         190          200       210       220         

          240       250       260       270       280       290    
MSL1.1 AGTYASEFCGVSCTGEGEAIIRATLARDVSAVMEYKGLNLQEAVDYVIKHRLDEGFAGLI
       :::::.:.:.:: ::.::::: ::.::::.:.::.:::.:.::.:::...:  .: .:::
ASPG_L AGTYANELCAVSATGKGEAIISATVARDVAALMEFKGLSLKEAADYVVHERTPKGTVGLI
     230       240       250       260       270       280         

          300       310       320          
MSL1.1 AVSNKGEVVCGFNSNGMFRGCATEDGFMEVAIWE  
       :::  ::..  ::..::::. :::::. :.:::   
ASPG_L AVSAAGEIAMPFNTTGMFRASATEDGYSEIAIWPTT
     290       300       310       320     

Library scan:  0:00:00  total CPU time:  0:00:00