SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSL1.14 (Universal genetic code) : 670 aa
 vs  library
 searching ig005i10 library

    266 residues in     1 sequences
The best scores are:                              s-w
IG005I10, 266 bases, 1529 checksum.                (266) 672

>>IG005I10, 266 bases, 1529 checksum.                (266 aa)
Smith-Waterman score: 672;   41.544% identity in 272 aa overlap

               10        20        30        40        50        60
MSL1.1 MRQKEEKKQSIKQKSISKSYSGFAFAVECYYYTTRFRSCVLTSFFFLILLYIHIKQLCFF

               70        80        90       100       110       120
MSL1.1 SCFVSFIMSLPPKNSSLFQEEKTERFKNREPLLRFKKIMEMVKASEKEHEKYKPKLFDLE

              130       140       150       160       170       180
MSL1.1 NVKKKNSSSRHFKRWNSDSALRIEDPDIDDGTVFKKTATSSIQPILPVLAMDEQPQPREA

              190       200       210       220       230       240
MSL1.1 TDEESQKDSGFLGYNEKFTRDQVILRFRGLQAKSCYFAYVTELEQMKDKFAKLLLGEDMS

              250       260       270       280       290       300
MSL1.1 GGSKGVSSALALSNAITNLAASAFGEIRRLEAISEDKKERWRREIGWLLSVTDHIVEFSP

              310       320       330        340       350         
MSL1.1 THQTNEDGSSMEVMTTKQRTDLVSNIPSLKKLDEMLL-DCLDKFKDQDEFYYVTPGSPES
                                . :.  .:  :: . ::.:..  ::.:.  ::  :
IG005I                         MVTSV--FDPCLLQEALDSFQNT-EFWYAEEGS-LS
                                         10        20         30   

     360                  370       380       390       400        
MSL1.1 ENS--NST---------RNDDKWWLPIVKVPPKGLSETLKRFLLSQRECVCQVLNSAMAI
        .:  .::         :...:::::.  :: .:::.  .. : ..:: . :. ..::::
IG005I MKSARSSTGSFRKVIVQRKEEKWWLPVPLVPSEGLSDKARKQLKNKRESTNQIHKAAMAI
             40        50        60        70        80        90  

      410       420       430       440        450        460      
MSL1.1 NSQVLTEMEIPESYIDSLPKKGRASLGDMIYRMITLE-MFDAEQFLLE-MDLSSEHKILD
       ::..:.:::::.::. .::: :..:.:: :::...    :  :: ::. ...::::. ..
IG005I NSSILSEMEIPDSYMTTLPKCGKSSVGDSIYRYMSGSGRFFPEQ-LLDCLNISSEHEAVQ
            100       110       120       130        140       150 

        470       480       490              500       510         
MSL1.1 LKNKFEASVVIWQRKIVQIDNKSSSPW-------STNLSMDKRQQLEERAATILQLIKQE
       : .. :::.  :.::   ..:...: :       ::.   ::   . ::: :.:  .::.
IG005I LADRVEASMYTWRRKSC-LSNSKNS-WNMVKDLMSTTERTDKNYVMAERAETLLFCLKQR
             160        170        180       190       200         

     520       530       540       550       560       570         
MSL1.1 FPGISQSTLDISKIQFNRDIGLAIVESYSRILESLAHTVMSRIEDVLEADQLTQNPELAM
       .: .::..::: :::.:.:.: :..:::::.::.:: .... :.::: .:.  .. :   
IG005I YPELSQTSLDICKIQYNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYVDKTMRGSE   
     210       220       230       240       250       260         

     580       590       600       610       620       630         
MSL1.1 CKIHIVKETESPEKEEEPNFCLLEDRPKKQKPTISLSEVMQWNIETNEPRKEKSDKKLLT

     640       650       660       670
MSL1.1 RVSSMIMSNNKKTTYLESLGTTRSPTAGRYS

Library scan:  0:00:00  total CPU time:  0:00:00