SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSL1.12 (Universal genetic code) : 545 aa
 vs  library
 searching a54757 library

    496 residues in     1 sequences
The best scores are:                              s-w
A54757, 496 bases, 2127 checksum.                  (496) 723

>>A54757, 496 bases, 2127 checksum.                  (496 aa)
Smith-Waterman score: 723;   28.429% identity in 503 aa overlap

               10        20        30        40        50        60
MSL1.1 MLTKPKPNSKFSILFTFLLLLSFLIFVARSSDVAVEAGSEEELDDLEQLLAVDEQLQEER
                                                                   
A54757                                                        MKYLA
                                                                   

               70        80        90               100       110  
MSL1.1 PEQQSEAETVSKAQRIVVELNGDNTKRLIDG--------NEYVMVLGYAPWCARSAELMP
             : .:  :  . ::.. : .  : :.        ::.:.:  :::::..   : :
A54757 LCFIALACAVHAA--VEVEIEED-VAVLTDAAFADYVAENEFVLVEFYAPWCGHCKSLAP
          10          20         30        40        50        60  

            120       130       140       150       160       170  
MSL1.1 RFAEAATDLKEIGSSVLMAKIDGERYSKVASQLEIKGFPTLLLFVNGTSQSYTGGFSSEE
       ... ::  ::. :::. .::.:.   ... ..  ..:.::: .: .: .. :.:: .. :
A54757 QYSIAAKTLKDSGSSIKLAKVDATVETQLPGKYGVRGYPTLKFFRSGKDSEYAGGRTGPE
             70        80        90       100       110       120  

            180         190       200       210       220          
MSL1.1 IVIWVQKKTG--ASTIKLDTVDEASGFLKKHHTFILGLFEKSEDSSGHDEFVKAA-SLDN
       :: :..::::  :.::   .:..: .::  ... ..:.: :  :    . :. .: ..:.
A54757 IVAWLNKKTGPPAATIA--SVEDAEAFLADKEVAVIGFF-K--DVP--QTFLDVAVNIDD
            130         140       150        160           170     

     230       240       250       260       270       280         
MSL1.1 EIQFVETSSIDVAKLLFPNLKTNNVFVGLVKTEAEKYTSYDGPCQAEKIVEFLNSNKFPL
        : :. .:  : :  .. : ....  . : :   :  . ..:   .: .. :. .:.. .
A54757 -IPFAIVS--DDA--VISNYEAKDGSIILFKKFDEGKNVFEGELTSEDLTSFVRKNSLSV
          180           190       200       210       220       230

     290       300       310         320       330       340       
MSL1.1 VTKLTESNTVRVYSSPVKLQVMVFSK--TDDFESLAQPLEDIARKFKSKLMLIYIDISNE
       ::.. : .. ..... .:.. ..: :  .:::... . .   :  ::...... :: . :
A54757 VTEFGEETASKIFGGEIKIHNLLFVKKDSDDFKTIYDQFYAAATTFKGEVLFVLIDAAAE
              240       250       260       270       280       290

       350       360         370       380         390       400   
MSL1.1 NLAMPFLTLFGIEDAK-KTV-VAAFDNNLNSKYLLESDP--SPSNIEEFCFGLAHGTVSA
       . .  .:  ::. : .  :: . ..:.... ::   . :  .  .. .: . .  : .. 
A54757 SNSR-ILEYFGLGDEEVPTVRLITLDGDMK-KYK-PTVPELTTESLSQFVIDFKDGKLKP
               300       310        320        330       340       

           410       420        430       440        450       460 
MSL1.1 YYKSQPIPDNQNASVVAV-VGRTFDEVVLRSSENVLLEV-CEWNSSSEPKLLSKELIKV-
       .  :. .:.. ::. :.. ::..: ::.:  ...::.:    : .        :.:  . 
A54757 HLMSESVPEDWNANPVTILVGENFAEVALDPTKDVLVEFYAPWCGHC------KQLAPIY
       350       360       370       380       390             400 

              470       480       490       500       510       520
MSL1.1 EKLSQHFKGFENLVFARIDASANEHPKLTVRDDPYHVDDYPTILLYKTGEKENPLKLSTK
       :.:..:::  :..:.:..:.. ::     : .:   : ..::. ..: ::.:  .  :  
A54757 EELGEHFKEREDVVIAKVDSTKNE-----V-EDAV-VRSFPTLKFWKKGENEM-VDYSGD
             410       420             430        440        450   

              530           540                   
MSL1.1 SSAKDMAVLINK--EL--KWKDQSGK-DEL             
        . . :  ....  :.  .  :.. . ::              
A54757 RTLEAMIQFVESGGEIIAEVDDEDMEEDEEMDEGAEDQAKDEL
           460       470       480       490      

Library scan:  0:00:00  total CPU time:  0:00:01