SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSL1.11 (Universal genetic code) : 190 aa
 vs  library
 searching pau82219 library

    207 residues in     1 sequences
The best scores are:                              s-w
PAU82219, 207 bases, 13F3 checksum.                (207)1143

>>PAU82219, 207 bases, 13F3 checksum.                (207 aa)
Smith-Waterman score: 1143;   83.092% identity in 207 aa overlap

               10                        20        30        40    
MSL1.1 MASRRRVLLKVIILGDSG----------------NQYKATIGADFLTKEVQIDDRIFTLQ
       ::::::.:::::::::::                :::::::::::::::::..::.::::
PAU822 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
               10        20        30        40        50        60

           50        60        70        80        90       100    
MSL1.1 IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF
       ::::::::::::::::::::::::::: ::::::::::::::::::::::.:::::::::
PAU822 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF
               70        80        90       100       110       120

          110       120       130       140       150       160    
MSL1.1 VVLGNKTDVDGGKSRVVTEKKAKSWCASKGNIPYFETSAKDGVNVDAAFECIAKNALKNE
       :::::: :::::.::::.:::::.::::::::::::::::.: ::: ::.:::::::.::
PAU822 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE
              130       140       150       160       170       180

          170       180        190
MSL1.1 PEEEVYLPDTIDVAGA-RQQRSTGCEC
       ::::.::::::::::. :::::.::::
PAU822 PEEEIYLPDTIDVAGGGRQQRSSGCEC
              190       200       

Library scan:  0:00:00  total CPU time:  0:00:00