SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MSL1.10 (Universal genetic code) : 487 aa
 vs  library
 searching cef55a112 library

    610 residues in     1 sequences
The best scores are:                              s-w
CEF55A112, 610 bases, 15D9 checksum.               (610) 959

>>CEF55A112, 610 bases, 15D9 checksum.               (610 aa)
Smith-Waterman score: 959;   35.385% identity in 520 aa overlap

               10            20        30        40        50      
MSL1.1 MIRLRTYAGL----SFMATLAVIYHAFSSRGQFYPATVYLSTSKISLVLLLNMCLVLMLS
          .:. :::    : .:: :.: .::    ::::. :::: :. :....  . .::.  
CEF55A    MRVSAGLMIGGSCVATAATILNAFLINKQFYPSIVYLSKSNASMAVIYVQGIVLVYL
                  10        20        30        40        50       

         60        70        80        90       100       110      
MSL1.1 LWHLVKFVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKAL
       ...:.: ...:.:: ::.:.:.:..:. ..:  .:.:.::.:::. :.   . ::.:: .
CEF55A MFQLLKSILFGDLRAAEAEHLSERTWHAVLETCLAFTVFRDDFSAIFVMQFIGLLFIKCF
        60        70        80        90       100       110       

        120       130        140       150       160       170     
MSL1.1 HWLAQKRVEYIETTPSVSKLS-HFRIVSFMGFLLLVDSLFMYSSIRHLIQSRQASVSLFF
       ::::. ::...: .: .. :  :.:... .. : ..:: :. :.    : .: ::... :
CEF55A HWLADDRVDMMERSPVIT-LRFHLRMMTVLAALGFADSYFVSSAYFTTI-TRGASAQIVF
       120       130        140       150       160        170     

         180       190       200        210       220       230    
MSL1.1 SFEYMILATTTVAIFVKYVFYVTDMLMDGQ-WEKKPVYTFYLELIRDLLHLSMYICFFFV
       .::: :: . .. . .::.... : : . : :..: :: .: ::. .:..  .:  :: :
CEF55A GFEYAILLALVLHVTIKYLLHMHD-LRNPQSWDNKAVYLLYAELFINLIRCLLY-GFFAV
         180       190        200       210       220        230   

           240       250       260       270       280       290   
MSL1.1 IFMN-YGVPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCI
       ...  .  ::  .: .:.. : ..    : .  :.  . ::..:: .. :.:.: :::::
CEF55A VMLRVHTFPLFSVRPFYQSVRALHKAFLDVILSRRAINAMNSQFPVVSAEDLAAMDATCI
           240       250       260       270       280       290   

           300          310       320       330              340   
MSL1.1 ICREEMT-NA--KKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPEN-------ATSAA
       ::::::: .:  :.: :.:.::.::::::..:::::::::. .   .:       :..::
CEF55A ICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDIWQGRNGAAAGGNAADAA
           300       310       320       330       340       350   

                              350         360        370       380 
MSL1.1 P--------GQR-------EL----HQ-G-SQQGTSSSGNQ-GSEISSSAGVSNNSLSRH
                : .        :    :: :  :: ....: : :.   ..:: . . .  :
CEF55A ANVADANVAGAQIGAGMPPFLPFLGHQFGFPQQPAGAGGAQPGA---AQAGGQPGPFP-H
           360       370       380       390          400          

             390       400       410       420       430           
MSL1.1 HARLQAAASAASVYGKSMVYPSANTVAWSSGVPGTEQVSTEPDQTLPQHNL---------
       .  . : : :      ... :    .:   : ::  .    :   ::: :          
CEF55A QI-FYAPAPANRPEFMNLIPPPPLPMA---GPPG--MFPMMPPPPLPQVNTTQGTSSETP
     410        420       430            440       450       460   

            440       450       460       470         480          
MSL1.1 PVENSHAYANMSETKLEEMRKSLETHLEGNQRTKESRLL--MQQSEYSGEKEKQNKR   
       :: :  .:...: :  ::.:.     .::..:  :. ::  .:                 
CEF55A PV-NP-SYSQLS-T--EELRR-----MEGESR--EA-LLARLQAMDNIMVLLESAQMQMI
             470               480          490       500       510

CEF55A QLATVTPIRPRPVVPSDESEQEAPGPSTDQVTSEEQEIPATSSAPSIFRTESPSTSSTAP
              520       530       540       550       560       570

CEF55A STSSPVTASSTPTTSSTRTPEAEEVRQRRLARLLGENANQ
              580       590       600       610

Library scan:  0:00:00  total CPU time:  0:00:01