information on T3E15    (98957..99559)

Direction: +

Frame: 2

ORF

    98957..99646  (Met: 98975 99029 99077 99155 99626 99194 99223 99309)
AYCYKVMPFGLKNAGATYQRLVNRMFADQLGKTIEVYIDDMLVKSAREKEHVQQLRECFK
ILNKFEMKLNPEKCSFRVP*RIPRIPSN*EASRPILSRLQPSSTCHRQKRHGRSNV*GRI
AALNRFISRCTDKCVPFYQLLRKDKKFDWNEDCEQAIKQLKAYLSEPPILAKPEEGEPLY
LYTAVSRTAISGVLVREDHEGQKPIYYVSKTLIDAETRYPAMEKLALA

GenBank annotation

    None

BLASTX cluster

    93864..101553    cluster 33    75 hits for protein gene

BLASTN cluster

    None

GENSCAN

    93864..101613    gene model 26
    73825..76313    gene model 20

    Suboptimal exon

        99219..99594    Intr    Phase: 1    Score: 0.186
        99219..99646    Term    Phase: 1    Score: 0.155

Grail



    Shadow exon

        98975..99047    exon    Phase: 0    Score: 21



Exon-Intron boundary candidatates



Acceptor




99028 [0.035] (2)
99048 [0.005] (1)
99187 [0.011] (2)
99254 [0.087] (0)




99261 [0.016] (1)
99349 [0.006] (2)
99380 [0.014] (0)
99447 [0.001] (1)




99516 [0.004] (1)
99603 [0.002] (1)




Donor



98971 [0.016] (0)
99047 [0.196] (1)
99087 [0.029] (2)
99298 [0.004] (0)



99336 [0.99N/0.819] (2)
99348 [0.116] (2)
99544 [0.380] (0)
99583 [0.019] (0)











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