information on T3E15    (59454..60554)

Direction: +

Frame: 3

ORF

    59034..60767  (Met: 59151 59184 59250 59304 59412 59448 59460 59490 59529 59649 59709 59715 59922 59970 60216 60315 60348 60393 60600 60627 59862 59870 59875)
NKFYDLLEGANNPLYDGYREGQSQLSLASRLVHNKAEYNMSEKLVDSVCEMFTNSLPEGN
QITTSHYQTEKLMRNLELPYHTIDVCQNNCMLFWKEDEKEDQYRFCGAQRWKPKDNRRRT
KLPYSHMWYLPIGDRLKRMYQRMYQSHKTVAAMRWHAEHQSKEGEMNHPSDAAEWRYFQE
LHPWFAEEPCNVYFGLCTDGFNRFGMSRNHSLWHVILTPYNLPPGMCMNTEYLFLTILNS
GPNHPRASLDVFLQPLIEELKELWSTGVDAYDVSLS*Y**AVLLLTISDFPAFSMLSGWT
THDKLSCPVCMESTKSFSLPNGRKTCWFDCHCRFLPHGHPSRRNRKDFVKGREVSSEYPP
ESLTGKQVYYEWLASVNPPKTKDVGGNGHEKKMLGYGKEHNWHKESILWELSYWKDLNLR
HIIDVMHTEKNFLDNIMNTLLRVKDKSKDNIMSRLDIEKFCSRPGLHIDSNGKAPFPTYS
LTDEAKQSLFQCVKHDVRFPDGYSSDLASCVDLENGKFSGMKSHDCHVFMERLLPFIFAE
LLDRNVHLALSGTVLTILFANIFLSNYLTCTYILGI

GenBank annotation

    None

BLASTX cluster

    58563..62361    cluster 21    22 hits for protein gene

BLASTN cluster

    None

GENSCAN

    58560..66103    gene model 17
    Suboptimal exon

        59040..59706    Intr    Phase: 0    Score: 0.137
        60068..60693    Intr    Phase: 2    Score: 0.422

Grail

    59056..59301    exon    Phase: 1    Score: 50
    59448..59842    exon    Phase: 0    Score: 60
    59970..60698    exon    Phase: 0    Score: 86

Exon-Intron boundary candidatates

Acceptor
59056 [0.001] (1) 59059 [0.010] (1) 59095 [0.185] (1) 59100 [0.014] (0)
59206 [0.160] (1) 59209 [0.006] (1) 59238 [0.006] (0) 59295 [0.86N/0.084] (0)
59320 [0.001] (1) 59323 [0.007] (1) 59445 [0.001] (0) 59457 [0.011] (0)
59469 [0.012] (0) 59482 [0.003] (1) 59545 [0.001] (1) 59551 [0.003] (1)
59725 [0.004] (1) 59884 [0.022] (1) 59903 [0.004] (2) 59921 [0.001] (2)
59932 [0.031] (1) 59965 [0.133] (1) 60038 [0.011] (2) 60068 [0.012] (2)
60074 [0.002] (2) 60133 [0.167] (1) 60285 [0.001] (0) 60325 [0.014] (1)
60433 [0.023] (1) 60449 [0.002] (2) 60487 [0.061] (1) 60541 [0.86N/0.114] (1)
60554 [0.003] (2) 60574 [0.082] (1) 60580 [0.002] (1) 60598 [0.041] (1)
60694 [0.002] (1) 60763 [0.493] (1)
Donor
59058 [0.81N/0.026] (1) 59301 [0.008] (1) 59416 [0.005] (2) 59584 [0.067] (2)
59601 [0.92N/0.011] (1) 59617 [0.74N/0.006] (2) 59706 [0.86N/0.588] (1) 59725 [0.004] (2)
59842 [0.045] (2) 60019 [0.009] (2) 60164 [0.004] (0) 60453 [0.93N/0.005] (1)
60472 [0.86N] (2) 60527 [0.003] (0) 60543 [0.007] (1) 60693 [1.00N/0.927] (1)
60698 [0.202] (0)

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