information on T3E15    (58968..59057)

Direction: +

Frame: 3

ORF

    58704..59861  (Met: 58797 58836 58842 58935 59151 59184 59250 59304 59412 59448 59460 59490 59529 59649 59709 59715 59031 59036 59053)
GKFHCPCSVCKNEKHIISGRRVNSHLFSQGFMPDYYVWYKHGKEMNMDIGTSTYTDRTYF
SLNYEEVGNVVEDPYVDMVNDAFNFNVGYDDNYHHDDSYQNVEEPVRNH**STTC*GANN
PLYDGYREGQSQLSLASRLVHNKAEYNMSEKLVDSVCEMFTNSLPEGNQITTSHYQTEKL
MRNLELPYHTIDVCQNNCMLFWKEDEKEDQYRFCGAQRWKPKDNRRRTKLPYSHMWYLPI
GDRLKRMYQRMYQSHKTVAAMRWHAEHQSKEGEMNHPSDAAEWRYFQELHPWFAEEPCNV
YFGLCTDGFNRFGMSRNHSLWHVILTPYNLPPGMCMNTEYLFLTILNSGPNHPRASLDVF
LQPLIEELKELWSTGVDAYDVSLS

GenBank annotation

    None

BLASTX cluster

    58563..62361    cluster 21    22 hits for protein gene

BLASTN cluster

    None

GENSCAN

    58560..66103    gene model 17
    Suboptimal exon

        58792..59018    Intr    Phase: 1    Score: 0.225
        59040..59706    Intr    Phase: 0    Score: 0.137

Grail

    58797..59018    exon    Phase: 0    Score: 69
    59056..59301    exon    Phase: 1    Score: 50
    59448..59842    exon    Phase: 0    Score: 60

Exon-Intron boundary candidatates

Acceptor
58727 [0.026] (2) 58787 [0.002] (2) 58824 [0.001] (0) 58852 [0.011] (1)
58900 [0.003] (1) 58918 [0.007] (1) 58921 [0.002] (1) 58997 [0.017] (2)
59004 [0.59N/0.059] (0) 59056 [0.001] (1) 59059 [0.010] (1) 59095 [0.185] (1)
59100 [0.014] (0) 59206 [0.160] (1) 59209 [0.006] (1) 59238 [0.006] (0)
59295 [0.86N/0.084] (0) 59320 [0.001] (1) 59323 [0.007] (1) 59445 [0.001] (0)
59457 [0.011] (0) 59469 [0.012] (0) 59482 [0.003] (1) 59545 [0.001] (1)
59551 [0.003] (1) 59725 [0.004] (1)
Donor
58704 [1.00N/0.757] (1) 58727 [0.006] (0) 58758 [0.021] (1) 58876 [0.020] (2)
58905 [0.019] (1) 58937 [0.004] (0) 58966 [0.023] (2) 59018 [0.021] (0)
59058 [0.81N/0.026] (1) 59301 [0.008] (1) 59416 [0.005] (2) 59584 [0.067] (2)
59601 [0.92N/0.011] (1) 59617 [0.74N/0.006] (2) 59706 [0.86N/0.588] (1) 59725 [0.004] (2)
59842 [0.045] (2)

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