BLASTX alignment cluster 19    (54432..57661)

Local alignments in this cluster

gi|3746069[fasta] (AC005311) putative reverse transcriptase [Arabidopsis thaliana]
Length 1231 aa
position (link: detail on the area) subject position direction score
54551..54438 (1185..1222) - 123
54720..54601 (1146..1185) - 144
54929..54699 (1076..1152) - 250
55113..54925 (1008..1070) - 152
55435..55160 (902..993) - 310
55828..55430 (757..889) - 292
56040..55831 (686..755) - 176
56347..56003 (583..697) - 353
56442..56320 (551..591) - 140
56792..56451 (434..547) - 403
57008..56805 (67..134) - 272
57161..57006 (1..52) - 224

gi|3327392[fasta] (AC004483) reverse-transcriptase-like protein [Arabidopsis thaliana]
Length 970 aa
position (link: detail on the area) subject position direction score
54551..54438 (924..961) - 131
54720..54601 (885..924) - 143
54929..54699 (815..891) - 249
55113..54925 (747..809) - 163
55435..55190 (643..724) - 258
55495..55430 (609..630) - 62
55828..55634 (539..603) - 180
55899..55828 (515..538) - 85
56347..56048 (415..514) - 287
56792..56526 (284..372) - 780

gi|2244915|emb|CAB10337.1|[fasta] (Z97339) strong homology to reverse transcriptase [Arabidopsis thaliana]
Length 929 aa
position (link: detail on the area) subject position direction score
55435..55310 (820..861) - 139
55684..55424 (723..809) - 127
55828..55736 (692..722) - 115
56040..55834 (621..689) - 171
56347..56003 (518..632) - 379
56792..56451 (386..499) - 437
56987..56862 (1..42) - 251

gi|4544460|gb|AAD22368.1|AC006592_25[fasta] (AC006592) putative reverse transcriptase [Arabidopsis thaliana]
Length 321 aa
position (link: detail on the area) subject position direction score
54551..54438 (275..312) - 141
54720..54601 (236..275) - 156
54929..54699 (166..242) - 290
55113..54925 (98..160) - 221
55411..55160 (1..84) - 219

gi|3860246[fasta] (AC005824) putative reverse-transcriptase protein [Arabidopsis thaliana]
gi|4510429|gb|AAD21515.1| (AC006929) putative reverse transcriptase [Arabidopsis thaliana]
Length 314 aa
position (link: detail on the area) subject position direction score
54551..54438 (268..305) - 120
54720..54601 (229..268) - 141
54929..54699 (159..235) - 341
54969..54925 (139..153) - 55
55113..55006 (90..125) - 147
55366..55109 (3..88) - 119

show all (39) hits

   gi|3513745
   gi|4432866|gb|AAD20714|
   gi|2583130
   gi|4539357|emb|CAB40051.1|
   gi|4522005|gb|AAD21778.1|
   gi|2244916|emb|CAB10338.1|
   gi|2708743
   gi|4557078|gb|AAD22517.1|AC007045_17
   gi|4335720|gb|AAD17398|
   gi|4263655|gb|AAD15377|
   gi|2213608
   gi|4538901|emb|CAB39638.1|
   gi|4262184|gb|AAD14501|
   gi|2618693
   gi|4006833
   gi|2129709|pir||S65812
   gi|4263828|gb|AAD15471|
   gi|3193294
   gi|3004545
   gi|3695376
   gi|3738337
   gi|3319372
   gi|2244803|emb|CAB10226.1|
   gi|3461840
   gi|3377824
   gi|3892061|gb|AAC78274.1|AAC78274
   gi|4512630|gb|AAD21699.1|
   gi|3047086
   gi|1402881|emb|CAA66812|
   gi|976284
   gi|4325364|gb|AAD17361|
   gi|3779023
   gi|2129716|pir||S65815
   gi|4262158|gb|AAD14458|

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