BLASTX alignment cluster 16    (41390..44376)


Local alignments in this cluster

gi|3377832[fasta] (AF075598) No definition line found [Arabidopsis thaliana]
Length 294 aa

position (link: detail on the area) subject position direction score

124168..124533 (141..262) + 296
121011..120577 (118..262) - 298
43855..44376 (121..294) + 690
43810..43866 (101..119) + 235
42120..41641 (113..272) - 356
13989..13663 (151..259) - 249


gi|2129618|pir||S66306[fasta] hypothetical protein 1 - Arabidopsis thaliana retrotransposon Athila
gi|806535|emb|CAA57397| (X81801) Athila ORF 1 [Arabidopsis thaliana]
Length 935 aa

position (link: detail on the area) subject position direction score

124747..124872 (823..864) + 67
124153..124632 (637..796) + 483
123707..124000 (418..515) + 202
122807..122917 (793..829) + 61
122514..122047 (50..205) - 694
122096..121602 (189..353) - 488
121565..121131 (371..515) - 367
121050..120541 (606..775) - 489
119999..119874 (823..864) - 42
119828..119724 (882..916) - 116
119726..119658 (912..934) - 48
94957..95262 (93..194) + 77
43915..44280 (642..763) + 321
43180..42788 (138..268) - 199
42042..41668 (640..764) - 312
33840..34274 (113..257) + 301
33669..33749 (55..81) + 64
19847..19948 (883..916) + 103
19310..19513 (823..890) + 82
19067..19132 (754..775) + 61
18890..19069 (606..665) + 127
18519..18812 (418..515) + 205
18378..18413 (371..382) + 60
17403..18350 (41..356) + 965
15724..15677 (11..26) - 53
15586..15245 (41..154) - 407
15305..14640 (135..356) - 795
14651..14613 (356..368) - 59
14471..14169 (418..518) - 235
13989..13579 (652..788) - 402
13441..13238 (823..890) - 85
12907..12803 (882..916) - 115


gi|4388721|gb|AAD19759|[fasta] (AC006413) putative Athila retroelement ORF 1 protein [Arabidopsis thaliana]
Length 750 aa

position (link: detail on the area) subject position direction score

124153..124611 (598..750) + 450
123788..124000 (406..476) + 120
122517..122047 (17..173) - 680
122096..121584 (157..327) - 497
121571..121368 (336..403) - 188
121343..121188 (406..457) - 131
121050..120520 (567..743) - 478
95080..95262 (102..162) + 68
43915..44280 (603..724) + 315
43180..42788 (106..236) - 179
42042..41668 (601..725) - 297
33840..34274 (81..225) + 273
18890..19069 (567..626) + 124
18597..18830 (405..482) + 124
18372..18413 (336..349) + 60
17403..18344 (9..322) + 59
15586..15287 (9..108) - 380
15305..14631 (103..327) - 795
14390..14169 (406..479) - 141
13989..13579 (613..749) - 374


gi|4263546|gb|AAD15360|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 451 aa

position (link: detail on the area) subject position direction score

124117..124599 (272..432) + 505
123707..123913 (13..81) + 203
121460..121218 (1..81) - 246
120960..120523 (283..428) - 475
43915..44280 (289..410) + 314
42087..41668 (272..411) - 304
41667..41599 (413..435) - 53
19067..19129 (401..421) + 67
18863..19069 (244..312) + 126
18519..18725 (13..81) + 158
14471..14265 (13..81) - 223
13989..13549 (299..445) - 428


gi|4432810|gb|AAD20661|[fasta] (AC006570) putative pol polyprotein, 3' partial [Arabidopsis thaliana]
Length 469 aa

position (link: detail on the area) subject position direction score

124288..124620 (24..134) + 310
121880..121794 (3..31) - 129
120822..120490 (24..134) - 302
99110..99646 (273..451) + 229
44032..44280 (23..105) + 213
41916..41668 (24..106) - 230
41667..41602 (108..129) - 53
41390..41229 (224..277) - 153
18066..18149 (4..31) + 412
14933..14841 (1..31) - 132
13899..13609 (24..120) - 276


gi|4309767|gb|AAD15536|[fasta] (AC006217) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 1012 aa

position (link: detail on the area) subject position direction score

125086..125403 (682..787) + 174
124432..124635 (592..659) + 175
124150..124272 (556..596) + 150
123707..123913 (367..435) + 209
122514..122068 (13..161) - 674
122021..121695 (174..282) - 368
121658..121602 (296..314) - 79
121538..121218 (329..435) - 294
120960..120838 (556..596) - 150
120678..120505 (592..649) - 174
119999..119706 (690..787) - 272
118546..118217 (903..1012) - 370
44182..44280 (593..625) + 96
43915..44019 (562..596) + 100
43156..42998 (109..161) - 114
42042..41929 (560..597) - 85
41766..41668 (594..626) - 107
34667..34783 (375..413) + 63
34149..34274 (176..217) + 81
33840..34097 (76..161) + 169
21044..21289 (910..991) + 146
19625..19972 (674..789) + 299
19076..19132 (619..637) + 59
18980..19069 (556..585) + 105
18519..18725 (367..435) + 197
18339..18401 (316..336) + 64
18288..18356 (297..319) + 86
17922..18230 (174..276) + 309
17415..17876 (8..161) + 176
15574..15290 (8..102) - 417
15305..15114 (98..161) - 288
15068..14760 (174..276) - 353
14705..14634 (296..319) - 98
14651..14598 (316..333) - 63
14471..14265 (367..435) - 226
13989..13915 (572..596) - 82
13755..13609 (592..640) - 151
13102..12788 (682..786) - 262
11647..11396 (910..993) - 137


gi|4309867|gb|AAD15540|[fasta] (AC006527) putative Athila retroelement orf1-like protein [Arabidopsis thaliana]
Length 248 aa

position (link: detail on the area) subject position direction score

124273..124533 (45..131) + 188
120837..120577 (45..131) - 193
44803..44865 (194..214) + 62
44023..44310 (46..141) + 41
41916..41650 (50..138) - 213
13914..13654 (45..131) - 183


gi|4417306|gb|AAD20430|[fasta] (AC006446) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 622 aa

position (link: detail on the area) subject position direction score

124165..124278 (412..449) + 122
122514..122029 (36..197) - 588
121451..121326 (203..244) - 76
120945..120832 (412..449) - 123
43915..44016 (413..446) + 94
43222..42974 (110..192) - 136
42662..42528 (227..271) - 78
42033..41935 (414..446) - 70
34778..34882 (251..285) + 65
33840..34121 (99..192) + 197
33770..33844 (75..99) + 61
17418..17909 (32..195) + 48
15571..15287 (32..126) - 305
15305..15081 (121..195) - 297
14465..14364 (214..247) - 64
13989..13909 (423..449) - 71


gi|4263541|gb|AAD15355|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 277 aa

position (link: detail on the area) subject position direction score

122514..122047 (70..225) - 797
122096..121890 (209..277) - 246
43180..42821 (158..277) - 173
33840..34274 (133..277) + 271
33785..33817 (114..124) + 36
33678..33749 (78..101) + 59
17364..18053 (48..277) + 1136
17276..17371 (19..50) + 133
17231..17293 (1..21) + 131
15757..15659 (1..33) - 86
15712..15245 (19..174) - 691
15305..14937 (155..277) - 625


[help]


Entrance