BLASTX alignment cluster 16    (41390..44376)

Local alignments in this cluster

gi|3377832[fasta] (AF075598) No definition line found [Arabidopsis thaliana]
Length 294 aa
position (link: detail on the area) subject position direction score
124168..124533 (141..262) + 296
121011..120577 (118..262) - 298
43855..44376 (121..294) + 690
43810..43866 (101..119) + 235
42120..41641 (113..272) - 356
13989..13663 (151..259) - 249

gi|2129618|pir||S66306[fasta] hypothetical protein 1 - Arabidopsis thaliana retrotransposon Athila
gi|806535|emb|CAA57397| (X81801) Athila ORF 1 [Arabidopsis thaliana]
Length 935 aa
position (link: detail on the area) subject position direction score
124747..124872 (823..864) + 67
124153..124632 (637..796) + 483
123707..124000 (418..515) + 202
122807..122917 (793..829) + 61
122514..122047 (50..205) - 694
122096..121602 (189..353) - 488
121565..121131 (371..515) - 367
121050..120541 (606..775) - 489
119999..119874 (823..864) - 42
119828..119724 (882..916) - 116
119726..119658 (912..934) - 48
94957..95262 (93..194) + 77
43915..44280 (642..763) + 321
43180..42788 (138..268) - 199
42042..41668 (640..764) - 312
33840..34274 (113..257) + 301
33669..33749 (55..81) + 64
19847..19948 (883..916) + 103
19310..19513 (823..890) + 82
19067..19132 (754..775) + 61
18890..19069 (606..665) + 127
18519..18812 (418..515) + 205
18378..18413 (371..382) + 60
17403..18350 (41..356) + 965
15724..15677 (11..26) - 53
15586..15245 (41..154) - 407
15305..14640 (135..356) - 795
14651..14613 (356..368) - 59
14471..14169 (418..518) - 235
13989..13579 (652..788) - 402
13441..13238 (823..890) - 85
12907..12803 (882..916) - 115

gi|4388721|gb|AAD19759|[fasta] (AC006413) putative Athila retroelement ORF 1 protein [Arabidopsis thaliana]
Length 750 aa
position (link: detail on the area) subject position direction score
124153..124611 (598..750) + 450
123788..124000 (406..476) + 120
122517..122047 (17..173) - 680
122096..121584 (157..327) - 497
121571..121368 (336..403) - 188
121343..121188 (406..457) - 131
121050..120520 (567..743) - 478
95080..95262 (102..162) + 68
43915..44280 (603..724) + 315
43180..42788 (106..236) - 179
42042..41668 (601..725) - 297
33840..34274 (81..225) + 273
18890..19069 (567..626) + 124
18597..18830 (405..482) + 124
18372..18413 (336..349) + 60
17403..18344 (9..322) + 59
15586..15287 (9..108) - 380
15305..14631 (103..327) - 795
14390..14169 (406..479) - 141
13989..13579 (613..749) - 374

gi|4263546|gb|AAD15360|[fasta] (AC006250) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 451 aa
position (link: detail on the area) subject position direction score
124117..124599 (272..432) + 505
123707..123913 (13..81) + 203
121460..121218 (1..81) - 246
120960..120523 (283..428) - 475
43915..44280 (289..410) + 314
42087..41668 (272..411) - 304
41667..41599 (413..435) - 53
19067..19129 (401..421) + 67
18863..19069 (244..312) + 126
18519..18725 (13..81) + 158
14471..14265 (13..81) - 223
13989..13549 (299..445) - 428

gi|4432810|gb|AAD20661|[fasta] (AC006570) putative pol polyprotein, 3' partial [Arabidopsis thaliana]
Length 469 aa
position (link: detail on the area) subject position direction score
124288..124620 (24..134) + 310
121880..121794 (3..31) - 129
120822..120490 (24..134) - 302
99110..99646 (273..451) + 229
44032..44280 (23..105) + 213
41916..41668 (24..106) - 230
41667..41602 (108..129) - 53
41390..41229 (224..277) - 153
18066..18149 (4..31) + 412
14933..14841 (1..31) - 132
13899..13609 (24..120) - 276

show all (9) hits

   gi|4309767|gb|AAD15536|
   gi|4309867|gb|AAD15540|
   gi|4417306|gb|AAD20430|
   gi|4263541|gb|AAD15355|

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