information on T3E15    (43918..44316)

Direction: +

Frame: 1

ORF

    43909..44646  (Met: 44014 44044 44056 44293 44305 44020 44031 44039)
TTEKLPDPGSFVLDCSISTSKFSRSLCDLGSSINLMP*CC*D*MTNYMPTRITLLFADRS
KRIPEGIFEDVPVKVGNSVIPADFVVLDYEKEPKDPLILERAFLATADARFDVKRGRISL
KVYDLEMKFGMDGSELTKTISSIDSSTYTPSKTAQNPTTEPHTTLQSAQLANESCNATGS
IDTTTHVDRHPRDSQTEGSAQPLQPTPLQALCDKFSSISSPALPSTNSLDSSKSASQDNK
PRVL

GenBank annotation

    None

BLASTX cluster

    33209..45210    cluster 12    56 hits for protein gene

BLASTN cluster

    None

GENSCAN

    43192..50804    gene model 15
    Suboptimal exon

        44044..44506    Init    Phase: 0    Score: 0.443
        44044..44640    Init    Phase: 0    Score: 0.140

Grail

    43803..43908    exon    Phase: 2    Score: 22
    44044..44649    exon    Phase: 0    Score: 70

Exon-Intron boundary candidatates

Acceptor
43934 [0.005] (1) 44042 [0.015] (1) 44137 [0.002] (0) 44188 [0.003] (0)
44217 [0.001] (2) 44293 [0.001] (0) 44318 [0.010] (1) 44352 [0.002] (2)
44380 [0.019] (0) 44393 [0.005] (1) 44450 [0.143] (1) 44500 [0.002] (0)
44603 [0.008] (1)
Donor
43933 [0.817] (1) 44136 [0.076] (0) 44140 [0.011] (1) 44243 [0.127] (2)
44260 [0.065] (1) 44277 [0.097] (0) 44548 [0.010] (1)

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