BLASTX alignment cluster 13    (37494..41220)

Local alignments in this cluster

gi|4432802|gb|AAD20654|[fasta] (AC006437) putative pol polyprotein, 5' partial [Arabidopsis thaliana]
Length 965 aa
position (link: detail on the area) subject position direction score
101320..101439 (485..524) + 48
101059..101235 (403..461) + 85
100823..101050 (322..397) + 74
100754..100798 (302..316) + 38
100475..100693 (209..281) + 40
40740..40639 (53..86) - 158
40639..40565 (87..111) - 82
40555..40466 (112..141) - 113
40457..40086 (145..268) - 562
40078..39857 (271..344) - 331
39851..39648 (347..414) - 323
39661..39425 (410..488) - 320
39424..39287 (483..528) - 199
38768..38646 (522..562) - 91
38624..38493 (579..622) - 193
38315..37932 (665..792) - 569
37889..37566 (792..899) - 496
37568..37515 (900..917) - 65
37494..37378 (927..965) - 104

gi|4567295|gb|AAD23707.1|AC006918_5[fasta] (AC006918) putative pol polyprotein [Arabidopsis thaliana]
Length 466 aa
position (link: detail on the area) subject position direction score
101443..101520 (396..421) + 61
101320..101436 (357..395) + 44
101059..101202 (269..316) + 55
100817..101050 (186..263) + 90
100577..100810 (109..186) + 200
40391..40041 (33..149) - 351
40078..39860 (137..209) - 281
39851..39648 (213..280) - 265
39628..39242 (287..415) - 488

gi|4309764|gb|AAD15533|[fasta] (AC006217) putative retroelement integrase [Arabidopsis thaliana]
Length 411 aa
position (link: detail on the area) subject position direction score
39961..39860 (1..34) - 140
39851..39648 (38..105) - 238
39589..39359 (129..205) - 270

gi|4263542|gb|AAD15356|[fasta] (AC006250) putative retrotransposon pol protein [Arabidopsis thaliana]
Length 622 aa
position (link: detail on the area) subject position direction score
99718..99798 (425..451) + 43
99161..99646 (238..399) + 221
98960..99076 (175..213) + 276
41390..41220 (91..147) - 160
40740..40636 (446..480) - 135
40403..40347 (505..523) - 63
39698..39651 (524..539) - 58
39628..39404 (547..621) - 270

gi|4206306[fasta] (AF049110) prpol [Zea mays]
Length 1317 aa
position (link: detail on the area) subject position direction score
115540..115647 (638..673) + 47
115390..115521 (584..627) + 52
115241..115378 (534..579) + 85
115150..115251 (504..537) + 62
101089..101277 (1149..1211) + 98
100814..101050 (1054..1132) + 175
100370..100813 (908..1055) + 228
99871..100053 (740..800) + 81
99646..99852 (663..731) + 177
98960..99568 (430..632) + 474
98854..98958 (262..296) + 68
98518..98676 (158..210) + 113
98332..98481 (92..141) + 286
41115..41020 (318..349) - 51
40923..40789 (364..408) - 99
40304..40074 (930..1006) - 106
40078..39917 (1005..1058) - 85
39860..39672 (1079..1141) - 87
39622..39506 (1159..1197) - 70
39433..39314 (1219..1258) - 54
39271..39242 (1272..1281) - 39

gi|4544372|gb|AAD22283.1|AC006920_7[fasta] (AC006920) putative reverse transcriptase [Arabidopsis thaliana]
Length 1787 aa
position (link: detail on the area) subject position direction score
115444..115647 (1052..1119) + 157
115220..115378 (997..1049) + 160
115147..115251 (973..1007) + 105
101056..101547 (1603..1766) + 494
100808..101050 (1518..1598) + 296
100385..100810 (1380..1521) + 335
100092..100220 (1259..1301) + 122
100006..100068 (1192..1212) + 78
99631..99825 (1104..1168) + 223
99476..99646 (1052..1108) + 190
98945..99427 (895..1055) + 631
98806..98955 (716..765) + 128
98413..98559 (653..701) + 102
98093..98191 (563..595) + 70
97742..97810 (464..486) + 72
94780..95268 (204..366) + 355
41115..41020 (788..819) - 58
40923..40789 (834..878) - 104
40304..40086 (1397..1469) - 73
40078..40049 (1472..1481) - 44
39985..39887 (1503..1535) - 92
39815..39648 (1560..1615) - 69
39652..39506 (1614..1662) - 101
39436..39302 (1685..1729) - 46
39271..39242 (1742..1751) - 40
33861..34073 (290..360) + 531

gi|2522228|dbj|BAA22787|[fasta] (AB007466) reverse transcriptase-like protein [Vicia faba]
Length 407 aa
position (link: detail on the area) subject position direction score
99685..99804 (309..348) + 48
98960..99634 (66..290) + 72
40920..40789 (1..44) - 211
40740..40669 (341..364) - 88

gi|4539665|gb|AAD22158.1|AF061282_11[fasta] (AF061282) polyprotein [Sorghum bicolor]
Length 924 aa
position (link: detail on the area) subject position direction score
99569..99622 (309..326) + 41
98960..99550 (110..306) + 109
40923..40789 (44..88) - 105
39845..39651 (618..682) - 91
39622..39509 (692..729) - 72

gi|629693|pir||S47444[fasta] probable integrase - common tobacco (fragment)
gi|530742|emb|CAA56791| (X80830) integrase [Nicotiana tabacum]
Length 382 aa
position (link: detail on the area) subject position direction score
101473..101553 (321..347) + 62
101356..101463 (283..318) + 64
101080..101283 (192..259) + 53
100817..101050 (103..180) + 196
100571..100792 (22..95) + 95
40160..40080 (25..51) - 51
39985..39911 (83..107) - 56
39839..39651 (134..196) - 99
39646..39500 (197..245) - 84

gi|280492|pir||S23570[fasta] pol polyprotein homolog - fungus (Cladosporium fulvum) transposon CfT-1 (fragment)
gi|2564|emb|CAA77891| (Z11866) Reverse Transcriptase [Cladosporium fulvum]
Length 1045 aa
position (link: detail on the area) subject position direction score
120690..120595 (172..203) - 58
99101..99646 (486..667) + 237
98960..99085 (438..479) + 137
40923..40786 (372..417) - 75
39815..39651 (932..986) - 103

gi|557718[fasta] (U15406) gag, pol and env protein precursor [Caenorhabditis elegans]
Length 2272 aa
position (link: detail on the area) subject position direction score
99712..99798 (1404..1432) + 51
99566..99646 (1354..1380) + 57
98966..99484 (1147..1319) + 68
40923..40786 (1079..1124) - 93
39812..39648 (1680..1734) - 76
39622..39488 (1742..1786) - 61

gi|4544430|gb|AAD22339.1|AC006955_25[fasta] (AC006955) putative reverse transcriptase [Arabidopsis thaliana]
Length 1411 aa
position (link: detail on the area) subject position direction score
100919..101050 (1110..1153) + 66
98966..99550 (636..830) + 80
39848..39651 (1104..1169) - 79
39619..39422 (1180..1245) - 83
39388..39284 (1245..1279) - 45

gi|4417307|gb|AAD20431|[fasta] (AC006446) putative pol polyprotein [Arabidopsis thaliana]
Length 353 aa
position (link: detail on the area) subject position direction score
101056..101181 (312..353) + 138
100808..101053 (227..308) + 268
100676..100810 (186..230) + 174
100382..100657 (95..186) + 229
100092..100220 (19..61) + 237
40313..40086 (110..185) - 73
39976..39896 (215..241) - 62
39830..39648 (264..324) - 75
39652..39578 (323..347) - 52

gi|1085915|pir||S52564[fasta] hypothetical protein 2 (clone Db314) - fruit fly (Drosophila buzzatii) retrotransposon Osvaldo
Length 754 aa
position (link: detail on the area) subject position direction score
100823..101050 (572..647) + 102
100628..100798 (509..565) + 82
99688..99804 (356..394) + 71
99422..99646 (266..340) + 126
40220..40125 (474..505) - 37
40075..40046 (521..530) - 39
39967..39941 (557..565) - 35
39934..39887 (569..584) - 40
39860..39699 (594..647) - 105

gi|4235644[fasta] (AF119040) polyprotein [Lycopersicon esculentum]
Length 1542 aa
position (link: detail on the area) subject position direction score
99572..99646 (929..953) + 49
98957..99559 (728..928) + 305
39970..39869 (1168..1201) - 56
39848..39651 (1210..1275) - 95
39661..39503 (1272..1324) - 55

gi|4539660|gb|AAD22153.1|AF061282_6[fasta] (AF061282) polyprotein [Sorghum bicolor]
Length 1484 aa
position (link: detail on the area) subject position direction score
100892..101050 (1179..1231) + 100
98960..99553 (677..874) + 68
39848..39651 (1182..1247) - 90
39619..39509 (1258..1294) - 67
39391..39299 (1322..1352) - 42

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