BLASTX alignment cluster 13    (37494..41220)


Local alignments in this cluster

gi|4432802|gb|AAD20654|[fasta] (AC006437) putative pol polyprotein, 5' partial [Arabidopsis thaliana]
Length 965 aa

position (link: detail on the area) subject position direction score

101320..101439 (485..524) + 48
101059..101235 (403..461) + 85
100823..101050 (322..397) + 74
100754..100798 (302..316) + 38
100475..100693 (209..281) + 40
40740..40639 (53..86) - 158
40639..40565 (87..111) - 82
40555..40466 (112..141) - 113
40457..40086 (145..268) - 562
40078..39857 (271..344) - 331
39851..39648 (347..414) - 323
39661..39425 (410..488) - 320
39424..39287 (483..528) - 199
38768..38646 (522..562) - 91
38624..38493 (579..622) - 193
38315..37932 (665..792) - 569
37889..37566 (792..899) - 496
37568..37515 (900..917) - 65
37494..37378 (927..965) - 104


gi|4567295|gb|AAD23707.1|AC006918_5[fasta] (AC006918) putative pol polyprotein [Arabidopsis thaliana]
Length 466 aa

position (link: detail on the area) subject position direction score

101443..101520 (396..421) + 61
101320..101436 (357..395) + 44
101059..101202 (269..316) + 55
100817..101050 (186..263) + 90
100577..100810 (109..186) + 200
40391..40041 (33..149) - 351
40078..39860 (137..209) - 281
39851..39648 (213..280) - 265
39628..39242 (287..415) - 488


gi|4309764|gb|AAD15533|[fasta] (AC006217) putative retroelement integrase [Arabidopsis thaliana]
Length 411 aa

position (link: detail on the area) subject position direction score

39961..39860 (1..34) - 140
39851..39648 (38..105) - 238
39589..39359 (129..205) - 270


gi|4263542|gb|AAD15356|[fasta] (AC006250) putative retrotransposon pol protein [Arabidopsis thaliana]
Length 622 aa

position (link: detail on the area) subject position direction score

99718..99798 (425..451) + 43
99161..99646 (238..399) + 221
98960..99076 (175..213) + 276
41390..41220 (91..147) - 160
40740..40636 (446..480) - 135
40403..40347 (505..523) - 63
39698..39651 (524..539) - 58
39628..39404 (547..621) - 270


gi|4206306[fasta] (AF049110) prpol [Zea mays]
Length 1317 aa

position (link: detail on the area) subject position direction score

115540..115647 (638..673) + 47
115390..115521 (584..627) + 52
115241..115378 (534..579) + 85
115150..115251 (504..537) + 62
101089..101277 (1149..1211) + 98
100814..101050 (1054..1132) + 175
100370..100813 (908..1055) + 228
99871..100053 (740..800) + 81
99646..99852 (663..731) + 177
98960..99568 (430..632) + 474
98854..98958 (262..296) + 68
98518..98676 (158..210) + 113
98332..98481 (92..141) + 286
41115..41020 (318..349) - 51
40923..40789 (364..408) - 99
40304..40074 (930..1006) - 106
40078..39917 (1005..1058) - 85
39860..39672 (1079..1141) - 87
39622..39506 (1159..1197) - 70
39433..39314 (1219..1258) - 54
39271..39242 (1272..1281) - 39


show all (16) hits

   gi|4544372|gb|AAD22283.1|AC006920_7
   gi|2522228|dbj|BAA22787|
   gi|4539665|gb|AAD22158.1|AF061282_11
   gi|629693|pir||S47444
   gi|280492|pir||S23570
   gi|557718
   gi|4544430|gb|AAD22339.1|AC006955_25
   gi|4417307|gb|AAD20431|
   gi|1085915|pir||S52564
   gi|4235644
   gi|4539660|gb|AAD22153.1|AF061282_6

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