information on T3E15    (39628..39404)

Direction: -

Frame: 3

ORF

    39799..39173  (Met: 39739 39688 39475 39472 39217 39190)
SLVTEVSISLTRFLRNCFFNMEFNIELLLPTIHKRADMLRFPTCRSKRFLRRQWENKKKE
WSYKLDDALWAYRTAFKTPLGTTPFHLLYGKACYLPVELEQKAAWAVKMMNFNIKSAGER
RLIQLNEVDEIQIHAYNNSKLYKERTKAYHDKKILTRTFEPNDQVILYDSILTLFPGKLS
SRWSGPTQSIRLDRMKPTFLQITMEDHLL

GenBank annotation

    None

BLASTX cluster

    41220..37494    cluster 13    16 hits for protein gene

BLASTN cluster

    None

GENSCAN

    42713..39087    gene model 14
    27339..25140    gene model 11
    Suboptimal exon

        39525..39220    Intr    Phase: 1    Score: 0.218

Grail

    39739..39170    exon    Phase: 0    Score: 92

Exon-Intron boundary candidatates

Acceptor
39196 [0.032] (0) 39235 [0.005] (0) 39246 [0.86N/0.770] (1) 39370 [0.001] (0)
39379 [0.003] (0) 39427 [0.003] (0) 39489 [0.004] (1) 39496 [0.317] (0)
39501 [0.008] (1) 39525 [0.005] (1) 39576 [0.010] (1) 39581 [0.008] (2)
39603 [0.006] (1) 39665 [0.003] (2) 39733 [0.002] (0)
Donor
39220 [0.051] (1) 39228 [0.015] (2) 39308 [1.00N/0.744] (0) 39532 [0.011] (1)
39681 [0.016] (2) 39785 [0.977] (0)

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