information on T3E15
(17403..18350)
Direction: +
Frame: 3
ORF
17295..18698 (Met: 17298 17520 17553 17631 17937 18202 18531 18150 18170 18295)
LMNYKKPKQRHPVISKNQLLWINRNRPVDVQDPPNVDQPRNIGAGDAPRNHHQRQVILPP
PVQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDRFDRFCGLTKINGVTEDMFKLRLFP
LSLGDKAHHWEKTLPPDFITSWDDCKKAFLAKFFSNARTTRLRNEIPGFTQKNNKTFCEA
WERVKSYTTQCPHHGFKKASLLSTLYRGALLKIRMLLDTASNENFLNKEVAEGWELVENL
AQSDGCYNEDYDRSVRETGGTEDKQSKDIKALNEKLDKLLLTRQK*TLHHR*STSKCKKW
GMIKLNSCATSRTKEGSTRATTTTSPTQTSPT*TNVANPQDQVYPPQENQSKLFVQYNQG
YVPKQQFNGGYQQQNPPPAFTQQPQQALAAQDPEIKQLIQQIIQGQATGAMAFDKKIAEL
HNKIVCFYNDLNFNFEALNSKIKYVESQFASTSALKHPQQLPGKAV
GenBank annotation
None
BLASTX cluster
10572..22307 cluster 6 44 hits for protein gene
BLASTN cluster
None
GENSCAN
16288..18698 gene model 7
Suboptimal exon
17298..18056 Init Phase: 0 Score: 0.750
Grail
17298..18152 exon Phase: 0 Score: 99
18186..18572 exon Phase: 0 Score: 86
Exon-Intron boundary candidatates
| Acceptor |
| 17295 [0.001] (0) |
17560 [0.001] (1) |
17582 [0.002] (2) |
17645 [0.048] (2) |
| 17668 [0.003] (1) |
17673 [0.110] (0) |
17777 [0.002] (2) |
17833 [0.001] (1) |
| 17936 [0.004] (2) |
17989 [0.002] (1) |
18090 [0.002] (0) |
18147 [0.002] (0) |
| 18153 [0.032] (0) |
18219 [0.005] (0) |
18234 [0.031] (0) |
18369 [0.040] (0) |
| 18399 [0.027] (0) |
18409 [0.001] (1) |
18420 [0.003] (0) |
18423 [0.020] (0) |
| 18504 [0.037] (0) |
18610 [0.020] (1) |
| Donor |
| 17716 [0.005] (2) |
17727 [0.053] (1) |
18152 [0.068] (0) |
18378 [0.005] (1) |
| 18628 [0.006] (2) |
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Entrance