BLASTX alignment cluster 36    (114641..115650)


Local alignments in this cluster

gi|4263831|gb|AAD15474|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1466 aa

position (link: detail on the area) subject position direction score

17553..17753 (168..234) + 137
33846..34067 (192..265) + 93
39652..39503 (1113..1162) - 102
40923..40789 (516..560) - 104
43936..44049 (426..463) + 59
94780..95313 (111..288) + 369
98150..98329 (380..439) + 89
98329..98424 (440..471) + 70
98960..99586 (582..790) + 786
100092..100214 (824..864) + 126
100484..100798 (953..1057) + 331
100823..100870 (1064..1079) + 64
101056..101544 (1102..1264) + 504
114584..114631 (309..324) + 68
114641..114757 (326..364) + 72
115147..115254 (655..690) + 115
115217..115378 (678..731) + 177
115378..115554 (732..790) + 192
122391..122095 (168..266) - 82


gi|4544372|gb|AAD22283.1|AC006920_7[fasta] (AC006920) putative reverse transcriptase [Arabidopsis thaliana]
Length 1787 aa

position (link: detail on the area) subject position direction score

33861..34073 (290..360) + 531
39271..39242 (1742..1751) - 40
39436..39302 (1685..1729) - 46
39652..39506 (1614..1662) - 101
39815..39648 (1560..1615) - 69
39985..39887 (1503..1535) - 92
40078..40049 (1472..1481) - 44
40304..40086 (1397..1469) - 73
40923..40789 (834..878) - 104
41115..41020 (788..819) - 58
94780..95268 (204..366) + 355
97742..97810 (464..486) + 72
98093..98191 (563..595) + 70
98413..98559 (653..701) + 102
98806..98955 (716..765) + 128
98945..99427 (895..1055) + 631
99476..99646 (1052..1108) + 190
99631..99825 (1104..1168) + 223
100006..100068 (1192..1212) + 78
100092..100220 (1259..1301) + 122
100385..100810 (1380..1521) + 335
100808..101050 (1518..1598) + 296
101056..101547 (1603..1766) + 494
115147..115251 (973..1007) + 105
115220..115378 (997..1049) + 160
115444..115647 (1052..1119) + 157


gi|3695395[fasta] (AF096372) contains similarity to reverse transcriptase (Pfam: PF00078 rvt, E=4.3e-08) [Arabidopsis thaliana]
Length 637 aa

position (link: detail on the area) subject position direction score

94804..95031 (1..76) + 103
98102..98179 (140..165) + 71
98237..98329 (185..215) + 88
98416..98673 (231..316) + 217
98987..99328 (453..566) + 361
99335..99556 (563..636) + 239
114845..114928 (77..104) + 87
115147..115239 (517..547) + 112
115339..115527 (575..637) + 156


gi|4432797|gb|AAD20649|[fasta] (AC006437) putative pol polyprotein [Arabidopsis thaliana]
Length 863 aa

position (link: detail on the area) subject position direction score

94768..94887 (98..137) + 71
97480..97617 (147..192) + 58
99143..99646 (324..491) + 438
99745..99930 (497..558) + 162
100012..100077 (556..577) + 60
100092..100220 (621..663) + 142
100390..100578 (676..738) + 62
115150..115218 (337..359) + 58
115289..115378 (383..412) + 105
115384..115620 (415..493) + 158


gi|4557066|gb|AAD22505.1|AC007045_5[fasta] (AC007045) putative Tat1 pol polyprotein [Arabidopsis thaliana]
Length 1212 aa

position (link: detail on the area) subject position direction score

94804..94986 (79..139) + 122
95092..95205 (145..182) + 103
95212..95313 (184..217) + 71
97733..97816 (242..269) + 78
98165..98317 (281..331) + 78
98863..98982 (355..394) + 72
98945..99217 (475..565) + 304
99338..99400 (564..584) + 74
99380..99646 (579..667) + 281
99631..99864 (663..740) + 297
100053..100214 (762..815) + 110
100370..100675 (873..974) + 285
100742..100798 (984..1002) + 85
100850..101053 (1012..1079) + 234
101212..101532 (1081..1187) + 305
115330..115647 (573..678) + 226


gi|4406792|gb|AAD20101|[fasta] (AC006304) putative reverse transcriptase [Arabidopsis thaliana]
Length 764 aa

position (link: detail on the area) subject position direction score

40923..40789 (549..593) - 103
41115..41020 (503..534) - 58
94780..94992 (96..166) + 156
97736..97810 (183..207) + 75
98108..98176 (288..310) + 57
98183..98329 (312..360) + 61
98329..98661 (361..471) + 262
98960..99400 (615..761) + 555
115150..115251 (689..722) + 100
115238..115357 (718..757) + 105


gi|4115365[fasta] (AC005957) reverse transcriptase-like protein [Arabidopsis thaliana]
Length 1329 aa

position (link: detail on the area) subject position direction score

39652..39476 (1156..1214) - 91
39830..39663 (1097..1152) - 77
40256..40086 (968..1024) - 63
40923..40789 (484..528) - 107
94675..95235 (89..275) + 152
98449..98637 (348..410) + 203
98960..98998 (550..562) + 64
99395..99586 (627..690) + 200
99631..99825 (699..763) + 245
100092..100220 (821..863) + 106
100370..100798 (930..1072) + 423
100844..101053 (1072..1141) + 239
101056..101553 (1145..1310) + 481
115333..115554 (617..690) + 115
115585..115647 (694..714) + 75
122385..122191 (183..247) - 59


gi|4378066|gb|AAD19359|[fasta] (AF098806) polyprotein [Sorghum bicolor]
Length 1877 aa

position (link: detail on the area) subject position direction score

22527..22598 (40..63) + 114
39271..39197 (1832..1856) - 48
39418..39302 (1784..1822) - 61
39631..39476 (1719..1770) - 94
39848..39663 (1646..1707) - 99
39934..39887 (1617..1632) - 48
40078..39947 (1568..1611) - 47
40304..40074 (1493..1569) - 106
94963..95313 (184..300) + 130
98329..98484 (651..702) + 104
98515..98721 (717..785) + 105
98821..98958 (816..861) + 72
98960..99397 (995..1140) + 391
99389..99553 (1137..1191) + 111
99631..99852 (1222..1295) + 186
99886..100059 (1308..1365) + 100
100370..100804 (1471..1615) + 224
100817..101050 (1618..1695) + 151
101092..101256 (1713..1767) + 88
101467..101544 (1830..1855) + 60
115217..115366 (1091..1140) + 95
115393..115521 (1149..1191) + 82
115537..115647 (1201..1237) + 67


gi|2791289|emb|CAA04050|[fasta] (AJ000387) protease [Drosophila melanogaster]
Length 1217 aa

position (link: detail on the area) subject position direction score

39827..39654 (974..1031) - 76
40923..40789 (372..416) - 92
98960..99646 (438..666) + 75
99697..99798 (685..718) + 54
115168..115251 (518..545) + 72
115354..115650 (580..678) + 88


gi|4417309|gb|AAD20433|[fasta] (AC006446) putative pol polyprotein with a reverse transcriptase domain [Arabidopsis thaliana]
Length 889 aa

position (link: detail on the area) subject position direction score

98000..98050 (2..18) + 106
98155..98223 (24..46) + 105
98225..98329 (43..77) + 163
98332..98961 (79..288) + 875
98960..99511 (361..544) + 812
99631..100059 (555..697) + 618
100092..100238 (747..795) + 210
115220..115387 (458..513) + 134
115387..115476 (514..543) + 69
115594..115647 (553..570) + 52


gi|1226168[fasta] (M32662) ORF B (bases 1850-5560) first start codon at 2306 [Autographa californica nucleopolyhedrovirus]
Length 1084 aa

position (link: detail on the area) subject position direction score

98975..115650 (265..500) + 91
98975..115650 (265..500) + 91
99697..99792 (507..538) + 59
115171..115254 (341..368) + 51


gi|102939|pir||B36329[fasta] hypothetical protein 2 - cabbage looper transposon TED (fragment)
Length 1236 aa

position (link: detail on the area) subject position direction score

98975..99646 (417..640) + 73
99697..99792 (659..690) + 59
115171..115254 (493..520) + 51
115354..115650 (554..652) + 91


gi|4206309[fasta] (AF049112) prpol [Zea mays]
Length 479 aa

position (link: detail on the area) subject position direction score

98960..99568 (51..253) + 50
99572..99646 (259..283) + 49
99646..99846 (284..350) + 173
99865..100053 (359..421) + 82
115217..115378 (147..200) + 89
115390..115521 (205..248) + 54
115540..115647 (259..294) + 48


gi|4206306[fasta] (AF049110) prpol [Zea mays]
Length 1317 aa

position (link: detail on the area) subject position direction score

39271..39242 (1272..1281) - 39
39433..39314 (1219..1258) - 54
39622..39506 (1159..1197) - 70
39860..39672 (1079..1141) - 87
40078..39917 (1005..1058) - 85
40304..40074 (930..1006) - 106
40923..40789 (364..408) - 99
41115..41020 (318..349) - 51
98332..98481 (92..141) + 286
98518..98676 (158..210) + 113
98854..98958 (262..296) + 68
98960..99568 (430..632) + 474
99646..99852 (663..731) + 177
99871..100053 (740..800) + 81
100370..100813 (908..1055) + 228
100814..101050 (1054..1132) + 175
101089..101277 (1149..1211) + 98
115150..115251 (504..537) + 62
115241..115378 (534..579) + 85
115390..115521 (584..627) + 52
115540..115647 (638..673) + 47


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