BLASTX alignment cluster 36    (114641..115650)

Local alignments in this cluster

gi|4263831|gb|AAD15474|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1466 aa
position (link: detail on the area) subject position direction score
17553..17753 (168..234) + 137
33846..34067 (192..265) + 93
39652..39503 (1113..1162) - 102
40923..40789 (516..560) - 104
43936..44049 (426..463) + 59
94780..95313 (111..288) + 369
98150..98329 (380..439) + 89
98329..98424 (440..471) + 70
98960..99586 (582..790) + 786
100092..100214 (824..864) + 126
100484..100798 (953..1057) + 331
100823..100870 (1064..1079) + 64
101056..101544 (1102..1264) + 504
114584..114631 (309..324) + 68
114641..114757 (326..364) + 72
115147..115254 (655..690) + 115
115217..115378 (678..731) + 177
115378..115554 (732..790) + 192
122391..122095 (168..266) - 82

gi|4544372|gb|AAD22283.1|AC006920_7[fasta] (AC006920) putative reverse transcriptase [Arabidopsis thaliana]
Length 1787 aa
position (link: detail on the area) subject position direction score
33861..34073 (290..360) + 531
39271..39242 (1742..1751) - 40
39436..39302 (1685..1729) - 46
39652..39506 (1614..1662) - 101
39815..39648 (1560..1615) - 69
39985..39887 (1503..1535) - 92
40078..40049 (1472..1481) - 44
40304..40086 (1397..1469) - 73
40923..40789 (834..878) - 104
41115..41020 (788..819) - 58
94780..95268 (204..366) + 355
97742..97810 (464..486) + 72
98093..98191 (563..595) + 70
98413..98559 (653..701) + 102
98806..98955 (716..765) + 128
98945..99427 (895..1055) + 631
99476..99646 (1052..1108) + 190
99631..99825 (1104..1168) + 223
100006..100068 (1192..1212) + 78
100092..100220 (1259..1301) + 122
100385..100810 (1380..1521) + 335
100808..101050 (1518..1598) + 296
101056..101547 (1603..1766) + 494
115147..115251 (973..1007) + 105
115220..115378 (997..1049) + 160
115444..115647 (1052..1119) + 157

gi|3695395[fasta] (AF096372) contains similarity to reverse transcriptase (Pfam: PF00078 rvt, E=4.3e-08) [Arabidopsis thaliana]
Length 637 aa
position (link: detail on the area) subject position direction score
94804..95031 (1..76) + 103
98102..98179 (140..165) + 71
98237..98329 (185..215) + 88
98416..98673 (231..316) + 217
98987..99328 (453..566) + 361
99335..99556 (563..636) + 239
114845..114928 (77..104) + 87
115147..115239 (517..547) + 112
115339..115527 (575..637) + 156

gi|4432797|gb|AAD20649|[fasta] (AC006437) putative pol polyprotein [Arabidopsis thaliana]
Length 863 aa
position (link: detail on the area) subject position direction score
94768..94887 (98..137) + 71
97480..97617 (147..192) + 58
99143..99646 (324..491) + 438
99745..99930 (497..558) + 162
100012..100077 (556..577) + 60
100092..100220 (621..663) + 142
100390..100578 (676..738) + 62
115150..115218 (337..359) + 58
115289..115378 (383..412) + 105
115384..115620 (415..493) + 158

gi|4557066|gb|AAD22505.1|AC007045_5[fasta] (AC007045) putative Tat1 pol polyprotein [Arabidopsis thaliana]
Length 1212 aa
position (link: detail on the area) subject position direction score
94804..94986 (79..139) + 122
95092..95205 (145..182) + 103
95212..95313 (184..217) + 71
97733..97816 (242..269) + 78
98165..98317 (281..331) + 78
98863..98982 (355..394) + 72
98945..99217 (475..565) + 304
99338..99400 (564..584) + 74
99380..99646 (579..667) + 281
99631..99864 (663..740) + 297
100053..100214 (762..815) + 110
100370..100675 (873..974) + 285
100742..100798 (984..1002) + 85
100850..101053 (1012..1079) + 234
101212..101532 (1081..1187) + 305
115330..115647 (573..678) + 226

show all (14) hits

   gi|4406792|gb|AAD20101|
   gi|4115365
   gi|4378066|gb|AAD19359|
   gi|2791289|emb|CAA04050|
   gi|4417309|gb|AAD20433|
   gi|1226168
   gi|102939|pir||B36329
   gi|4206309
   gi|4206306

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