information on T3E15    (11394..11245)

Direction: -

Frame: 1

ORF

    11505..10153  (Met: 11475 11427 11409 11328 11106 10956 10896 10869 10707 10668 10659 10608 10407 10395 10356)
IFTCFGQWRGMRKRPFSFFHPWNCSYMESQRTMKDGSLGYLEFCVYDVEYRLPIEHLELM
YGFPSGKDTSHCFDKRELQSFWATLGSKHGFSSYRTKSNEIRSAVVRYFHRSLASALFPR
ERNETNVNGELELMETTLQELLGLASDGTVLAGDQTDTSVSFYLIEHLLSYRGWAKGLQK
PGKMVVREVVTPILRACNVPLHSMLIPPIWIDMEHLINSRSFWLQQKNGLYKYRFDHPTA
GQSIFLLPNPASTSIRDGGNIEFCPPMENLYISGDEAVPMEGMNDDEAPIHHSDNEAEPM
DESYDTQQFYCEEYSAPRQSKDSKEIHKRLGFLQSWCKFQDKALAALNKKFNNLQLKISC
SSSTTAMPHNMPFGRSGSTRHEPMHFDPPSPPRQSSYEPREHHAAPAPPRQSSFEPREKE
KRSKLKKRRRTRKSDTGASHSTAPLEEPLDQ

GenBank annotation

    None

BLASTX cluster

    11396..10962    cluster 5    1 hits for protein gene

BLASTN cluster

    None

GENSCAN

    11409..10153    gene model 4
    Suboptimal exon

        11475..10153    Sngl    Phase: 0    Score: 0.126

Grail

    10395..10150    exon    Phase: 0    Score: 25
    10804..10150    exon    Phase: 2    Score: 60

Exon-Intron boundary candidatates

Acceptor
10378 [0.002] (2) 10409 [0.053] (1) 10485 [0.022] (0) 10581 [0.005] (0)
10613 [0.004] (1) 10676 [0.002] (1) 10784 [0.032] (1) 10787 [0.001] (1)
10804 [0.485] (2) 10830 [0.485] (0) 10846 [0.086] (2) 10990 [0.032] (2)
11040 [0.002] (0) 11051 [0.001] (1) 11057 [0.006] (1) 11072 [0.001] (1)
11173 [0.070] (2) 11185 [0.001] (2) 11221 [0.56N/0.229] (2) 11342 [0.002] (1)
11360 [0.011] (1)
Donor
10497 [0.164] (1) 10951 [0.014] (0) 11064 [0.011] (1) 11174 [0.015] (2)
11191 [0.013] (0) 11327 [0.010] (2) 11478 [0.115] (1)

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