information on T3E15    (108406..108371)

Direction: -

Frame: 3

ORF

    108811..107807  (Met: 108769 108757 108670 108463 108388 108277 108196 108127 108115 107977)
QDPSFCAFPPPHTGMNLAMKILGKLKDWGIEKKVFSITVDNAGNNDTMQEIVKSQLVLRD
DLLCKGEFFHVRCATHILNIIVQIGLKGIGDTLEKIRESIKYVKGSEHREILFAKCMENV
GINLKAGLLLDVANRWNSTFKMLDRALKYRAAFGNLKVIDAKNYKFHPTDAEWHRLQQMS
DFLESFDQITNLISGSIYPTSNLYFMQVWKFQNWLTVNESNQDEVIRNMIVLMKERFDKY
WAEVSNIFAIATVFDPRLKLTLADYCFAKLDISTREKGMKHLRAQLRKLFEVYENKSNAV
SPTTESREDVTPDDETAKGNFSNYDVSFLCFVFVS

GenBank annotation

    None

BLASTX cluster

    109374..107357    cluster 35    8 hits for protein gene

BLASTN cluster

    None

GENSCAN

    118848..101808    gene model 27

Grail

    108196..107804    exon    Phase: 0    Score: 86
    108596..107804    exon    Phase: 2    Score: 80

Exon-Intron boundary candidatates

Acceptor
107807 [0.014] (2) 107937 [0.003] (1) 107993 [0.86N] (2) 108000 [0.009] (1)
108021 [0.038] (1) 108084 [0.012] (1) 108131 [0.003] (2) 108162 [0.021] (1)
108181 [0.003] (0) 108189 [0.002] (1) 108228 [0.227] (1) 108303 [0.087] (1)
108377 [0.007] (2) 108407 [0.093] (2) 108596 [0.006] (2) 108615 [0.005] (1)
108693 [0.002] (1) 108733 [0.002] (0) 108771 [0.006] (1)
Donor
107837 [1.00N/0.986] (0) 107953 [0.010] (1) 107989 [0.004] (1) 108042 [0.007] (2)
108079 [0.005] (1) 108083 [0.94N/0.528] (0) 108105 [0.74N/0.076] (2) 108229 [0.167] (1)
108274 [0.003] (1) 108352 [0.043] (1) 108433 [0.015] (1) 108451 [0.006] (1)
108466 [0.004] (1) 108487 [0.011] (1) 108510 [0.90N/0.231] (2) 108659 [0.021] (0)
108685 [0.90N/0.142] (1)

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