information on T3E15
(108265..107873)
Direction: -
Frame: 3
ORF
108811..107807 (Met: 108769 108757 108670 108463 108388 108277 108196 108127 108115 107977)
QDPSFCAFPPPHTGMNLAMKILGKLKDWGIEKKVFSITVDNAGNNDTMQEIVKSQLVLRD
DLLCKGEFFHVRCATHILNIIVQIGLKGIGDTLEKIRESIKYVKGSEHREILFAKCMENV
GINLKAGLLLDVANRWNSTFKMLDRALKYRAAFGNLKVIDAKNYKFHPTDAEWHRLQQMS
DFLESFDQITNLISGSIYPTSNLYFMQVWKFQNWLTVNESNQDEVIRNMIVLMKERFDKY
WAEVSNIFAIATVFDPRLKLTLADYCFAKLDISTREKGMKHLRAQLRKLFEVYENKSNAV
SPTTESREDVTPDDETAKGNFSNYDVSFLCFVFVS
GenBank annotation
None
BLASTX cluster
109374..107357 cluster 35 8 hits for protein gene
BLASTN cluster
None
GENSCAN
118848..101808 gene model 27
Grail
108196..107804 exon Phase: 0 Score: 86
108596..107804 exon Phase: 2 Score: 80
Exon-Intron boundary candidatates
Acceptor |
107807 [0.014] (2) |
107937 [0.003] (1) |
107993 [0.86N] (2) |
108000 [0.009] (1) |
108021 [0.038] (1) |
108084 [0.012] (1) |
108131 [0.003] (2) |
108162 [0.021] (1) |
108181 [0.003] (0) |
108189 [0.002] (1) |
108228 [0.227] (1) |
108303 [0.087] (1) |
108377 [0.007] (2) |
108407 [0.093] (2) |
108596 [0.006] (2) |
108615 [0.005] (1) |
108693 [0.002] (1) |
108733 [0.002] (0) |
108771 [0.006] (1) |
Donor |
107837 [1.00N/0.986] (0) |
107953 [0.010] (1) |
107989 [0.004] (1) |
108042 [0.007] (2) |
108079 [0.005] (1) |
108083 [0.94N/0.528] (0) |
108105 [0.74N/0.076] (2) |
108229 [0.167] (1) |
108274 [0.003] (1) |
108352 [0.043] (1) |
108433 [0.015] (1) |
108451 [0.006] (1) |
108466 [0.004] (1) |
108487 [0.011] (1) |
108510 [0.90N/0.231] (2) |
108659 [0.021] (0) |
108685 [0.90N/0.142] (1) |
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