information on T3E15
(10749..10696)
Direction: -
Frame: 1
ORF
11505..10153 (Met: 11475 11427 11409 11328 11106 10956 10896 10869 10707 10668 10659 10608 10407 10395 10356)
IFTCFGQWRGMRKRPFSFFHPWNCSYMESQRTMKDGSLGYLEFCVYDVEYRLPIEHLELM
YGFPSGKDTSHCFDKRELQSFWATLGSKHGFSSYRTKSNEIRSAVVRYFHRSLASALFPR
ERNETNVNGELELMETTLQELLGLASDGTVLAGDQTDTSVSFYLIEHLLSYRGWAKGLQK
PGKMVVREVVTPILRACNVPLHSMLIPPIWIDMEHLINSRSFWLQQKNGLYKYRFDHPTA
GQSIFLLPNPASTSIRDGGNIEFCPPMENLYISGDEAVPMEGMNDDEAPIHHSDNEAEPM
DESYDTQQFYCEEYSAPRQSKDSKEIHKRLGFLQSWCKFQDKALAALNKKFNNLQLKISC
SSSTTAMPHNMPFGRSGSTRHEPMHFDPPSPPRQSSYEPREHHAAPAPPRQSSFEPREKE
KRSKLKKRRRTRKSDTGASHSTAPLEEPLDQ
GenBank annotation
None
BLASTX cluster
11396..10962 cluster 5 1 hits for protein gene
BLASTN cluster
None
GENSCAN
11409..10153 gene model 4
Suboptimal exon
11475..10153 Sngl Phase: 0 Score: 0.126
Grail
10395..10150 exon Phase: 0 Score: 25
10804..10150 exon Phase: 2 Score: 60
Exon-Intron boundary candidatates
Acceptor |
10378 [0.002] (2) |
10409 [0.053] (1) |
10485 [0.022] (0) |
10581 [0.005] (0) |
10613 [0.004] (1) |
10676 [0.002] (1) |
10784 [0.032] (1) |
10787 [0.001] (1) |
10804 [0.485] (2) |
10830 [0.485] (0) |
10846 [0.086] (2) |
10990 [0.032] (2) |
11040 [0.002] (0) |
11051 [0.001] (1) |
11057 [0.006] (1) |
11072 [0.001] (1) |
11173 [0.070] (2) |
11185 [0.001] (2) |
11221 [0.56N/0.229] (2) |
11342 [0.002] (1) |
11360 [0.011] (1) |
Donor |
10497 [0.164] (1) |
10951 [0.014] (0) |
11064 [0.011] (1) |
11174 [0.015] (2) |
11191 [0.013] (0) |
11327 [0.010] (2) |
11478 [0.115] (1) |
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