BLASTX alignment cluster 6    (10572..22307)

Local alignments in this cluster

gi|3047073[fasta] (AF058825) contains similarity to retrotransposon-like proteins [Arabidopsis thaliana]
Length 589 aa
position (link: detail on the area) subject position direction score
13173..13090 (562..589) - 81
13576..13163 (438..575) - 548
13989..13648 (333..446) - 471
14039..13977 (313..333) - 80
14516..14280 (241..319) - 266
14705..14598 (178..213) - 193
14854..14759 (129..160) - 149
15634..15227 (1..136) - 548
17364..17750 (4..132) + 140
18139..18228 (130..159) + 122
18288..18692 (179..313) + 459
18968..19096 (313..355) + 168
19175..19546 (438..561) + 534
33678..33749 (34..57) + 57
33840..33965 (89..130) + 69
34667..34783 (264..302) + 68
42042..41671 (321..444) - 222
43915..44280 (323..444) + 273
99089..99175 (506..534) + 59
120058..120011 (574..589) - 82
120248..120126 (521..561) - 184
120492..120253 (440..519) - 322
120972..120571 (313..446) - 572
121721..121233 (157..319) - 628
121807..121718 (129..158) - 127
122514..122194 (26..132) - 548
123662..123898 (241..319) + 259
124138..124539 (313..446) + 564
124612..124983 (438..561) + 504
125024..125098 (565..589) + 79

gi|4309767|gb|AAD15536|[fasta] (AC006217) putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
Length 1012 aa
position (link: detail on the area) subject position direction score
11647..11396 (910..993) - 137
13102..12788 (682..786) - 262
13755..13609 (592..640) - 151
13989..13915 (572..596) - 82
14471..14265 (367..435) - 226
14651..14598 (316..333) - 63
14705..14634 (296..319) - 98
15068..14760 (174..276) - 353
15305..15114 (98..161) - 288
15574..15290 (8..102) - 417
17415..17876 (8..161) + 176
17922..18230 (174..276) + 309
18288..18356 (297..319) + 86
18339..18401 (316..336) + 64
18519..18725 (367..435) + 197
18980..19069 (556..585) + 105
19076..19132 (619..637) + 59
19625..19972 (674..789) + 299
21044..21289 (910..991) + 146
33840..34097 (76..161) + 169
34149..34274 (176..217) + 81
34667..34783 (375..413) + 63
41766..41668 (594..626) - 107
42042..41929 (560..597) - 85
43156..42998 (109..161) - 114
43915..44019 (562..596) + 100
44182..44280 (593..625) + 96
118546..118217 (903..1012) - 370
119999..119706 (690..787) - 272
120678..120505 (592..649) - 174
120960..120838 (556..596) - 150
121538..121218 (329..435) - 294
121658..121602 (296..314) - 79
122021..121695 (174..282) - 368
122514..122068 (13..161) - 674
123707..123913 (367..435) + 209
124150..124272 (556..596) + 150
124432..124635 (592..659) + 175
125086..125403 (682..787) + 174

gi|2129618|pir||S66306[fasta] hypothetical protein 1 - Arabidopsis thaliana retrotransposon Athila
gi|806535|emb|CAA57397| (X81801) Athila ORF 1 [Arabidopsis thaliana]
Length 935 aa
position (link: detail on the area) subject position direction score
12907..12803 (882..916) - 115
13441..13238 (823..890) - 85
13989..13579 (652..788) - 402
14471..14169 (418..518) - 235
14651..14613 (356..368) - 59
15305..14640 (135..356) - 795
15586..15245 (41..154) - 407
15724..15677 (11..26) - 53
17403..18350 (41..356) + 965
18378..18413 (371..382) + 60
18519..18812 (418..515) + 205
18890..19069 (606..665) + 127
19067..19132 (754..775) + 61
19310..19513 (823..890) + 82
19847..19948 (883..916) + 103
33669..33749 (55..81) + 64
33840..34274 (113..257) + 301
42042..41668 (640..764) - 312
43180..42788 (138..268) - 199
43915..44280 (642..763) + 321
94957..95262 (93..194) + 77
119726..119658 (912..934) - 48
119828..119724 (882..916) - 116
119999..119874 (823..864) - 42
121050..120541 (606..775) - 489
121565..121131 (371..515) - 367
122096..121602 (189..353) - 488
122514..122047 (50..205) - 694
122807..122917 (793..829) + 61
123707..124000 (418..515) + 202
124153..124632 (637..796) + 483
124747..124872 (823..864) + 67

gi|3695396[fasta] (AF096372) contains similarity to Arabidopsis thaliana retrotransposon Athila (GB:X81801) [Arabidopsis thaliana]
Length 489 aa
position (link: detail on the area) subject position direction score
13459..12734 (248..489) - 966
13935..13813 (210..250) - 185
14090..13989 (177..210) - 152
14516..14079 (30..175) - 617
18474..18812 (30..142) + 102
18803..19030 (139..214) + 313
19289..20017 (247..489) + 1005
120251..119655 (291..489) - 757
120381..120253 (248..290) - 189
120858..120736 (210..250) - 163
121131..120910 (141..214) - 318
121532..121116 (9..147) - 597
123662..124000 (30..142) + 456
123997..124098 (142..175) + 151
124087..124200 (177..214) + 153
124252..124374 (210..250) + 177
124729..125454 (248..489) + 799

gi|4325357|gb|AAD17354|[fasta] (AF128395) contains similarity to Arabidopsis thaliana retrotransposon Athila hypothetical protein 1 (GB:X81801) [Arabidopsis thaliana]
Length 446 aa
position (link: detail on the area) subject position direction score
13621..13517 (412..446) - 93
13989..13615 (289..413) - 537
14090..13977 (252..289) - 143
14186..14070 (215..253) - 178
15305..14991 (111..215) - 493
15634..15290 (1..115) - 539
17364..17999 (4..215) + 91
18812..19069 (217..302) + 383
19073..19234 (393..446) + 132
33840..34190 (89..205) + 220
42042..41671 (277..400) - 262
43222..42884 (100..212) - 142
43915..44280 (279..400) + 319
121128..120439 (217..446) - 944
122060..121944 (177..215) - 151
122514..122047 (26..181) - 747
123994..124098 (216..250) + 163
124087..124671 (252..446) + 780

show all (44) hits

   gi|4263543|gb|AAD15357|
   gi|4388721|gb|AAD19759|
   gi|4263544|gb|AAD15358|
   gi|4263541|gb|AAD15355|
   gi|3695399
   gi|4567294|gb|AAD23706.1|AC006918_4
   gi|3319360
   gi|4432809|gb|AAD20660|
   gi|4309768|gb|AAD15537|
   gi|3319352
   gi|4417306|gb|AAD20430|
   gi|3319361
   gi|3377816
   gi|4263546|gb|AAD15360|
   gi|4417310|gb|AAD20434|
   gi|3327397
   gi|4263545|gb|AAD15359|
   gi|3047067
   gi|1666236
   gi|4325348|gb|AAD17346|
   gi|4388724|gb|AAD19762|
   gi|4325348|gb|AAD17346|
   gi|4263654|gb|AAD15376|
   gi|4567296|gb|AAD23708.1|AC006918_6
   gi|4432810|gb|AAD20661|
   gi|4567296|gb|AAD23708.1|AC006918_6
   gi|4388732|gb|AAD19770|
   gi|4388732|gb|AAD19770|
   gi|4567293|gb|AAD23705.1|AC006918_3
   gi|4309868|gb|AAD15541|
   gi|3047063
   gi|3047063
   gi|4388825|gb|AAD19780|
   gi|4309705|gb|AAD15489|
   gi|3377832
   gi|2522227|dbj|BAA22786|
   gi|2522230|dbj|BAA22788|
   gi|4309867|gb|AAD15540|
   gi|4263831|gb|AAD15474|

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