information on T3E15    (103293..102661)

Direction: -

Frame: 1

ORF

    103299..102538  (Met: 103266 103209 103203 103110 102873 102771)
LLFQAEIERLKMELSTSKDLEKGYAEKIGLMEMEIGGLQADKQTARKQIHRLEQRREELS
KEVMDLTSTALGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEVESNLA
LIDQITKVAIDLTVEKPRLQAEMDELEARCKSKEVSDFTLSKLDLPQVSEISVVRPMDVD
EQGTPIGLDEFGSNKDAFPGGLAEGSGTVFTTPDSLFVLGFCVLFQTWCLGRLLSFRLLL
FELGAWEGFYLLFV

GenBank annotation

    None

BLASTX cluster

    105800..102661    cluster 34    2 hits for protein gene

BLASTN cluster

    None

GENSCAN

    118848..101808    gene model 27
    83311..78774    gene model 22

    Suboptimal exon

        103287..102699    Intr    Phase: 0    Score: 0.418
        103287..102838    Intr    Phase: 0    Score: 0.104

Grail

    103266..102535    exon    Phase: 0    Score: 98

Exon-Intron boundary candidatates

Acceptor
102557 [0.001] (1) 102604 [0.002] (2) 102621 [0.252] (0) 102641 [0.004] (1)
102791 [0.009] (1) 102798 [0.221] (0) 102990 [0.002] (0) 103011 [0.005] (0)
103029 [0.015] (0) 103056 [0.002] (0) 103137 [0.004] (0) 103218 [0.039] (0)
103283 [1.00N/0.730] (1) 103287 [1.00N/0.992] (0)
Donor
102653 [0.011] (2) 102676 [0.005] (0) 102681 [0.74N/0.808] (1) 102687 [0.106] (1)
102699 [0.006] (1) 102781 [0.006] (0) 102838 [0.472] (0) 102854 [0.006] (2)
102919 [0.025] (0) 102958 [0.015] (0) 103114 [0.012] (0) 103233 [0.006] (1)

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