information on T3E15    (100892..101050)

Direction: +

Frame: 2

ORF

    100070..101212  (Met: 100472 100487 100514 100550 100643 100727 100757 100769 100787 101207)
RAHGSVPQTSQNPQRRKHLCRRLGSSRLHVRSFRQKNYPGRRNRTPEHRPNGQTRWDENT
LKHHPVARALAAAAEIGAAEEEPELGTPEQPTSYKPEPYNDLRIPIIDYIERGITPPDKW
ETRKLKAQSAGYCIMEGRLMKRNIAGPYMVCTYGQQTKDLMKSKREGQCGSHCSGRTLAL
RVKKQGYFWPTMLADCIAHSLRCDKCQRHAPALHQPPEEMSSISSPYPFMKWSMDVVGPM
EASGGKKRLKNLLVLTDYSTKWIEAKSFQQVTEKQVEDFVWENIICRHGIPYEIVTDNGT
NLTSGKIKAFCDKWKIRLTTSTPRYPQGRQKPPTKLYLTTSRKDLIPKNQCGPTCSTEFS
GPNELHLASQHKKHCSLSPMV

GenBank annotation

    None

BLASTX cluster

    93864..101553    cluster 33    75 hits for protein gene

BLASTN cluster

    None

GENSCAN

    93864..101613    gene model 26
    Suboptimal exon

        100114..101051    Intr    Phase: 2    Score: 0.209
        100178..101051    Intr    Phase: 0    Score: 0.261

Grail


    Shadow exon

        100782..100879    exon    Phase: 1    Score: 37

Exon-Intron boundary candidatates

Acceptor
100195 [0.002] (2) 100201 [0.004] (2) 100284 [0.015] (1) 100287 [0.007] (1)
100299 [0.005] (1) 100506 [0.006] (1) 100662 [0.003] (1) 100675 [0.063] (2)
100763 [0.006] (0) 100782 [0.283] (1) 100880 [0.048] (0)
Donor
100156 [0.124] (0) 100347 [0.013] (2) 100362 [0.005] (2) 100461 [0.061] (2)
100505 [0.102] (1) 100516 [0.004] (0) 100577 [0.007] (1) 100674 [0.063] (2)
100799 [0.007] (1) 100879 [0.88N/0.456] (0) 100906 [0.004] (0) 101051 [0.92N/0.926] (1)
101174 [0.007] (1)

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