information on T3E15
(105461..105090)
Direction: -
Frame: 2
ORF
105632..104736 (Met: 105461 105335 105254 105194 105158 105074 105041 104744)
LLSSFIIYCALFCRGRKISSFFFLLLSPSFLFYSLLLDLPSLLFSFISLVLLCRNRKMID
FEDSQNKSNHSYDNDEISFETRSAALPPRVQRRVITLGRMGPIRLPSTRADKAKKKKAAK
QGGGTPMTNSDLVDLRRRCQVLVEVNMILPRLPLHPENMSVGWCCAYANFFEKCGLFFLI
PVCILEMLYCLGLAFPQMCPNFVRHVQALFTRAREVNREFSCHDLLQLCQVKTNARRDQG
TYYINARPGSLVLVGLKACRDTNWRSKYFFFRVDCHSIGSFDPARITRTWSTNLGQMET
GenBank annotation
None
BLASTX cluster
105800..102661 cluster 34 2 hits for protein gene
BLASTN cluster
None
GENSCAN
118848..101808 gene model 27
Suboptimal exon
105041..104833 Intr Phase: 0 Score: 0.110
Grail
105011..104733 exon Phase: 0 Score: 53
105461..104733 exon Phase: 0 Score: 86
Exon-Intron boundary candidatates
| Acceptor |
| 104793 [0.95N/0.640] (2) |
104812 [0.056] (1) |
104817 [0.114] (2) |
104861 [0.003] (0) |
| 104942 [0.038] (0) |
104951 [0.004] (0) |
104979 [0.002] (2) |
105011 [0.54N/0.038] (0) |
| 105041 [0.004] (0) |
105281 [0.002] (0) |
105306 [0.003] (2) |
105340 [0.001] (1) |
| 105420 [0.002] (2) |
105437 [0.005] (0) |
105445 [0.001] (1) |
105461 [0.003] (0) |
| 105589 [0.002] (1) |
105591 [0.016] (2) |
| Donor |
| 104750 [0.322] (1) |
104833 [0.034] (2) |
104880 [0.006] (0) |
104911 [0.006] (2) |
| 104943 [0.014] (0) |
104988 [0.013] (0) |
105145 [0.005] (2) |
105153 [0.004] (0) |
| 105201 [0.876] (0) |
105213 [0.132] (0) |
105237 [0.004] (0) |
105590 [0.106] (1) |
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Entrance