BLASTX alignment cluster 1    (8..1310)

Local alignments in this cluster

gi|3513745[fasta] (AF080118) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 42.57) [Arabidopsis thaliana]
Length 1662 aa
position (link: detail on the area) subject position direction score
63822..63610 (1362..1432) - 1167
63606..63478 (1435..1477) - 59
63422..63291 (1515..1558) - 40
1516..1310 (1..69) - 217
1331..1185 (63..111) - 172
1179..706 (853..1010) - 579
711..628 (1015..1042) - 122
643..317 (1038..1146) - 391
333..232 (1142..1175) - 132
295..5 (1155..1251) - 327

gi|2708743[fasta] (AC003952) putative Tal-1-like reverse transcriptase [Arabidopsis thaliana]
Length 1365 aa
position (link: detail on the area) subject position direction score
63942..63478 (1005..1159) - 51
63473..63438 (1177..1188) - 38
63380..63171 (1206..1275) - 132
63170..62928 (1280..1360) - 239
1179..727 (470..620) - 402
711..610 (632..665) - 85
622..317 (662..763) - 177
336..232 (758..792) - 83
247..2 (788..869) - 230

gi|2213608[fasta] (AC000103) F21J9.2 [Arabidopsis thaliana]
Length 1048 aa
position (link: detail on the area) subject position direction score
63936..63721 (974..1045) - 282
1191..730 (433..586) - 381
711..643 (599..621) - 86
613..350 (632..719) - 175
336..232 (725..759) - 83
247..2 (755..836) - 228

gi|2583130[fasta] (AC002387) putative reverse transcriptase [Arabidopsis thaliana]
Length 1374 aa
position (link: detail on the area) subject position direction score
63942..63616 (1014..1122) - 145
63594..63478 (1131..1169) - 88
1191..727 (467..621) - 402
711..610 (633..666) - 83
622..326 (663..761) - 180
336..232 (759..793) - 72
247..5 (789..869) - 206

gi|2618693[fasta] (AC002510) putative zinc-finger protein [Arabidopsis thaliana]
Length 1094 aa
position (link: detail on the area) subject position direction score
63945..63475 (734..890) - 229
63386..63279 (933..968) - 104
63170..62928 (1009..1089) - 194
1179..727 (200..350) - 359
711..610 (362..395) - 89
622..323 (392..491) - 184
336..232 (488..522) - 75
235..2 (522..599) - 182

gi|3377824[fasta] (AF075598) contains similarity to reverse transcriptases [Arabidopsis thaliana]
Length 1077 aa
position (link: detail on the area) subject position direction score
1179..796 (447..574) - 100
613..317 (601..699) - 223
333..232 (695..728) - 108
247..8 (724..803) - 200

gi|2129709|pir||S65812[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta11-1
gi|976278 (L47193) reverse transcriptase [Arabidopsis thaliana]
Length 1333 aa
position (link: detail on the area) subject position direction score
63942..63589 (1008..1125) - 342
63591..63469 (1126..1166) - 94
63380..63279 (1216..1249) - 95
1224..730 (458..622) - 359
711..643 (635..657) - 86
613..350 (668..755) - 178
247..2 (791..872) - 158

gi|3746069[fasta] (AC005311) putative reverse transcriptase [Arabidopsis thaliana]
Length 1231 aa
position (link: detail on the area) subject position direction score
1191..898 (331..428) - 100
903..727 (426..484) - 95
711..616 (496..527) - 95
610..350 (530..616) - 95
327..235 (625..655) - 58
232..8 (657..731) - 105

gi|2244915|gnl|PID|e327476[fasta] (Z97339) strong homology to reverse transcriptase [Arabidopsis thaliana]
Length 929 aa
position (link: detail on the area) subject position direction score
1179..898 (287..380) - 116
903..727 (378..436) - 94
711..637 (448..472) - 86
610..533 (482..507) - 60
472..350 (511..551) - 48
327..235 (560..590) - 58
232..8 (592..666) - 115

gi|3193294[fasta] (AF069298) similar to reverse transcriptases (Pfam: rvt.hmm, score: 53.76) [Arabidopsis thaliana]
Length 657 aa
position (link: detail on the area) subject position direction score
1182..871 (36..139) - 123
861..727 (141..185) - 52
711..655 (197..215) - 64
589..446 (237..284) - 93
330..217 (323..360) - 73
235..8 (355..430) - 71

gi|2129710|pir||S65821[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta14 (fragment)
Length 184 aa
position (link: detail on the area) subject position direction score
1179..706 (21..178) - 115

gi|976280[fasta] (L47191) reverse transcriptase [Arabidopsis thaliana]
Length 199 aa
position (link: detail on the area) subject position direction score
1179..706 (27..184) - 115

gi|3461840[fasta] (AC005315) putative reverse transcriptase [Arabidopsis thaliana]
Length 1529 aa
position (link: detail on the area) subject position direction score
1182..919 (792..879) - 76
876..727 (892..941) - 62
711..613 (953..985) - 84
583..446 (995..1040) - 66
295..26 (1091..1180) - 115

gi|976174[fasta] (L47181) reverse transcriptase [Arabidopsis thaliana]
Length 199 aa
position (link: detail on the area) subject position direction score
1179..727 (27..177) - 92

gi|2129713|pir||S65816[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta23 (fragment)
Length 184 aa
position (link: detail on the area) subject position direction score
1179..727 (21..171) - 92

gi|2129714|pir||S65819[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta24 (fragment)
Length 184 aa
position (link: detail on the area) subject position direction score
1230..730 (4..170) - 102

gi|976176[fasta] (L47187) reverse transcriptase [Arabidopsis thaliana]
Length 199 aa
position (link: detail on the area) subject position direction score
1230..730 (10..176) - 102

gi|2129715|pir||S65817[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta25 (fragment)
Length 184 aa
position (link: detail on the area) subject position direction score
1230..706 (4..178) - 128

gi|976178[fasta] (L47183) reverse transcriptase [Arabidopsis thaliana]
Length 199 aa
position (link: detail on the area) subject position direction score
1230..706 (10..184) - 128

gi|2146771|pir||S65814[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta11-1 (fragments)
Length 257 aa
position (link: detail on the area) subject position direction score
1224..730 (11..175) - 105
711..670 (188..201) - 63
583..536 (200..215) - 62

gi|1402881|gnl|PID|e248476[fasta] (X98130) non-ltr retrotransposon reverse transcriptase-like protein [Arabidopsis thaliana]
Length 893 aa
position (link: detail on the area) subject position direction score
1191..871 (487..593) - 129
873..691 (591..651) - 55
711..634 (651..676) - 81
586..452 (692..736) - 76

gi|2129711|pir||S65818[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta20 (fragment)
Length 184 aa
position (link: detail on the area) subject position direction score
1179..706 (21..178) - 110

gi|976169[fasta] (L47185) reverse transcriptase [Arabidopsis thaliana]
Length 199 aa
position (link: detail on the area) subject position direction score
1179..706 (27..184) - 110

gi|3327392[fasta] (AC004483) reverse-transcriptase-like protein [Arabidopsis thaliana]
Length 970 aa
position (link: detail on the area) subject position direction score
1137..898 (199..278) - 106
903..727 (276..334) - 96
711..625 (346..374) - 94
544..350 (384..448) - 60
232..155 (489..514) - 43

gi|3892061[fasta] (AC002330) putative reverse transcriptase [Arabidopsis thaliana]
Length 543 aa
position (link: detail on the area) subject position direction score
1182..871 (36..139) - 53
861..727 (141..185) - 52
711..655 (197..215) - 64
589..446 (237..284) - 93
330..217 (323..360) - 73
235..89 (355..403) - 35

gi|976171[fasta] (L47188) reverse transcriptase [Arabidopsis thaliana]
Length 195 aa
position (link: detail on the area) subject position direction score
1167..730 (27..172) - 87

gi|2129712|pir||S65820[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta21 (fragment)
Length 180 aa
position (link: detail on the area) subject position direction score
1167..730 (21..166) - 87

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