information on T27D20    (49183..48857)

Direction: -

Frame: 1

ORF

    49474..48836  (Met: 49459 49051)
GAKSKMSKQCLLSCFLFFCFFIPQLSFSCPQDQRQSLLEFKNLLIHNIKDNYTAFEELGT
WRPNSDCCKWLRVTCNASSPSKEVIDLNLFLLIPPGLVSSSILRPILRINSLVGLDVSFN
NIQGEIPGYAFVNLTSLISLDMCCNRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIK
ELKNLQELILDENLIGGAIPSEIGKLENKFSNI

GenBank annotation

    49459..46940    T27D20.9

BLASTX cluster

    49324..47081    cluster 8    61 hits for protein gene

BLASTN cluster

    None

GENSCAN

    52495..46943    gene model 10
    Suboptimal exon

        49459..48865    Init    Phase: 0    Score: 0.268

Grail

    49178..48833    exon    Phase: 2    Score: 88
    49459..48833    exon    Phase: 0    Score: 83

Exon-Intron boundary candidatates

Acceptor
48916 [0.010] (0) 48971 [0.93N/0.944] (2) 48974 [0.002] (2) 48988 [0.61N] (0)
49037 [0.014] (2) 49299 [0.146] (1) 49327 [0.001] (0) 49380 [0.003] (1)
49477 [0.011] (0)
Donor
48865 [1.00N/0.954] (1) 48958 [0.036] (1) 49252 [0.96N/0.015] (1)

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Entrance