information on T27D20    (47320..47183)

Direction: -

Frame: 1

ORF

    48808..46943  (Met: 48790 48739 48601 48112 48103 47902 47893 47617 47590 47116 46966)
NVLPFKMLQGSLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNL
VNLSTLSLSMNKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEG
NNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWL
ADLKIRNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSEN
NFSGSVPKSITKIPFLKLLDLSKNRLSGEFPRFRPESYLEWLDISSNEFSGDVPAYFGGS
TSMLLMSQNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSL
KGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIP
NIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLK
VLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGR
IPESPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEETIFSWNAA
AIGCSCGFLIAVVFMSYNELWK

GenBank annotation

    49459..46940    T27D20.9

BLASTX cluster

    49324..47081    cluster 8    61 hits for protein gene

BLASTN cluster

    None

GENSCAN

    52495..46943    gene model 10
    Suboptimal exon

        48495..46943    Term    Phase: 1    Score: 0.121
        48780..46943    Term    Phase: 1    Score: 0.294
        48780..46944    Intr    Phase: 1    Score: 0.103
        48780..48511    Intr    Phase: 1    Score: 0.144

Grail

    48790..46940    exon    Phase: 0    Score: 95

Exon-Intron boundary candidatates

Acceptor
46974 [0.056] (1) 46977 [0.001] (1) 47010 [0.004] (1) 47083 [0.097] (0)
47162 [0.007] (2) 47170 [0.002] (0) 47193 [0.002] (1) 47298 [0.004] (1)
47302 [0.014] (0) 47388 [0.002] (1) 47433 [0.020] (1) 47459 [0.321] (2)
47496 [0.043] (1) 47567 [0.013] (2) 47712 [0.002] (1) 47724 [0.001] (1)
47747 [0.002] (2) 47755 [0.023] (0) 47757 [0.115] (1) 47773 [0.002] (0)
47793 [0.002] (1) 47873 [0.002] (2) 48006 [0.422] (1) 48019 [0.001] (0)
48078 [0.002] (1) 48115 [0.080] (0) 48142 [0.085] (0) 48161 [0.015] (2)
48193 [0.003] (0) 48219 [0.002] (1) 48227 [0.016] (2) 48234 [0.141] (1)
48251 [0.002] (2) 48296 [0.214] (2) 48360 [0.021] (1) 48363 [0.86N/0.001] (1)
48377 [0.011] (2) 48403 [0.011] (0) 48466 [0.007] (0) 48472 [0.001] (0)
48475 [0.147] (0) 48510 [0.062] (1) 48645 [0.045] (1) 48742 [0.002] (0)
48776 [0.001] (2) 48780 [0.057] (1)
Donor
46944 [0.88N] (2) 47002 [0.053] (1) 47194 [0.88N/0.095] (1) 47303 [0.009] (0)
47369 [0.81N/0.053] (0) 47684 [0.020] (0) 47725 [0.004] (1) 47756 [0.005] (0)
47890 [0.003] (1) 47905 [0.069] (1) 48007 [0.011] (1) 48110 [0.088] (0)
48116 [0.070] (0) 48148 [0.006] (1) 48421 [0.74N/0.022] (1) 48467 [0.228] (0)
48511 [0.118] (1) 48705 [0.016] (2)

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