BLASTX alignment cluster 2    (11436..18206)

Local alignments in this cluster

gi|3402755|gnl|PID|e1314599[fasta] (AL031187) putative transposable element [Arabidopsis thaliana]
Length 1308 aa
position (link: detail on the area) subject position direction score
75827..75681 (556..604) - 78
17721..18206 (1147..1308) + 590
16512..17654 (771..1151) + 1361
15720..16391 (506..729) + 936
15555..15692 (461..506) + 204
15161..15631 (330..486) + 549
15017..15172 (231..282) + 200
14987..15082 (223..254) + 93
14918..14974 (199..217) + 69
14847..14918 (175..198) + 111
14326..14844 (1..173) + 61
13765..13394 (880..1003) - 286
13333..13214 (1025..1064) - 57
12879..12655 (1153..1227) - 200
12648..12439 (1229..1298) - 120

gi|99721|pir||S05465[fasta] retrovirus-related polyprotein - Arabidopsis thaliana retrotransposon Ta1-3
gi|16534 (X13291) polyprotein [Arabidopsis thaliana]
Length 1291 aa
position (link: detail on the area) subject position direction score
75827..75669 (575..627) - 91
16524..17996 (801..1291) + 1534
15555..16352 (470..735) + 1107
15164..15631 (340..495) + 463
14969..15169 (224..290) + 179
14918..15085 (205..260) + 158
14338..14982 (11..225) + 2667
13756..13394 (909..1029) - 275
13333..13223 (1051..1087) - 60
13004..12912 (1164..1194) - 61
12870..12652 (1209..1281) - 201
11761..11588 (1179..1236) - 102
11576..11475 (1241..1274) - 61

gi|99719|pir||S23319[fasta] hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Landsberg) (fragment)
gi|16384 (X53976) orf 2 [Arabidopsis thaliana]
Length 1084 aa
position (link: detail on the area) subject position direction score
17316..17678 (964..1084) + 400
16524..17315 (701..964) + 784
15555..16352 (370..635) + 1073
15176..15631 (244..395) + 474
15011..15169 (138..190) + 190
14918..15085 (105..160) + 164
14847..14918 (81..104) + 87
14620..14841 (5..78) + 120
13896..13855 (746..759) - 37
13828..13781 (784..799) - 39
13756..13394 (809..929) - 298
13291..13214 (964..989) - 51

gi|3687234[fasta] (AC005169) putative copia-like transposable element [Arabidopsis thaliana]
Length 1137 aa
position (link: detail on the area) subject position direction score
17865..18200 (1023..1134) + 319
17547..17810 (933..1020) + 272
16620..17543 (621..928) + 790
16530..16607 (583..608) + 68
15747..16367 (319..525) + 665
15065..15199 (198..242) + 78
14918..15058 (159..205) + 62
14853..14915 (137..157) + 57
14524..14844 (27..133) + 678
13765..13373 (694..824) - 269
13333..13214 (839..878) - 83
13204..13106 (884..916) - 51
13001..12912 (956..985) - 59
12864..12808 (1002..1020) - 80
12756..12658 (1022..1054) - 76
12639..12463 (1060..1118) - 144

gi|1167523|gnl|PID|d1012341[fasta] (D83003) ORF(AA 1-1338) [Nicotiana tabacum]
Length 1338 aa
position (link: detail on the area) subject position direction score
17754..18188 (1178..1322) + 351
17508..17726 (1097..1169) + 229
16842..17510 (872..1094) + 554
16656..16820 (811..865) + 102
16203..16397 (660..724) + 106
15900..16199 (556..655) + 207
15711..15890 (494..553) + 161
15440..15532 (405..435) + 70
15218..15427 (332..401) + 94
15017..15136 (204..243) + 97
14563..14844 (53..146) + 132
13834..13394 (848..994) - 354
13330..13214 (1017..1055) - 61
13225..13100 (1054..1095) - 47
13001..12915 (1133..1161) - 67
12879..12658 (1173..1246) - 179
12633..12409 (1254..1328) - 121

gi|130582|sp|P10978|POLX_TOBAC[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|100342|pir||S04273 hypothetical protein - common tobacco
gi|20045 (X13777) ORF [Nicotiana tabacum]
Length 1328 aa
position (link: detail on the area) subject position direction score
17733..18194 (1170..1323) + 375
17523..17711 (1101..1163) + 216
16839..17507 (870..1092) + 576
16647..16820 (807..864) + 100
16200..16343 (662..709) + 80
15696..16199 (491..658) + 380
15461..15541 (414..440) + 69
15182..15424 (322..402) + 94
14978..15088 (190..226) + 59
14569..14844 (57..148) + 119
14338..14439 (4..37) + 102
13834..13394 (847..993) - 354
13330..13217 (1016..1053) - 66
13225..13100 (1053..1094) - 64
13001..12888 (1132..1169) - 76
12864..12655 (1177..1246) - 176
12633..12463 (1253..1309) - 111

gi|99755|pir||S23312[fasta] RNA-directed DNA polymerase (EC 2.7.7.49) - Arabidopsis thaliana retrotransposon Ta1-1 (fragment)
gi|16356 (X53973) reverse transcriptase [Arabidopsis thaliana]
Length 587 aa
position (link: detail on the area) subject position direction score
16524..18206 (25..585) + 1252
13756..13394 (133..253) - 290
13333..13214 (275..314) - 64
13004..12912 (388..418) - 59
12870..12652 (433..505) - 201
12639..12463 (509..567) - 102
11761..11588 (403..460) - 102
11576..11475 (465..498) - 61

gi|2443320|dbj||D85597_1[fasta] (D85597) polyprotein [Oryza australiensis]
Length 1317 aa
position (link: detail on the area) subject position direction score
75827..75672 (564..615) - 67
17991..18179 (1243..1305) + 149
17523..17975 (1084..1234) + 359
17295..17507 (1005..1075) + 122
16851..17216 (858..979) + 305
16644..16835 (790..853) + 137
16203..16394 (675..738) + 77
15696..16115 (506..645) + 243
15555..15707 (460..510) + 71
15188..15433 (334..415) + 97
15056..15178 (242..282) + 199
13828..13217 (833..1036) - 419
13004..12918 (1114..1142) - 58
12891..12631 (1152..1238) - 153
12651..12463 (1234..1296) - 87
11758..11582 (1130..1188) - 76
11576..11463 (1191..1228) - 74
11433..11380 (1236..1253) - 43

gi|2961349|gnl|PID|e1273348[fasta] (AL022140) LTR retrotransposon like protein [Arabidopsis thaliana]
Length 1109 aa
position (link: detail on the area) subject position direction score
17937..18203 (1015..1103) + 120
17595..17957 (900..1020) + 226
17295..17387 (806..836) + 57
17085..17210 (737..778) + 100
16842..17066 (657..731) + 195
16704..16820 (612..650) + 74
16212..16334 (530..570) + 96
15909..16214 (426..527) + 147
15696..15890 (357..421) + 173
13935..13813 (587..627) - 82
13831..13538 (634..731) - 292
13525..13112 (735..872) - 300
13072..13007 (883..904) - 80
13004..12867 (906..951) - 86
12873..12397 (950..1108) - 374

gi|3513747[fasta] (AF080118) contains similarity to reverse transcriptases (Pfam; rvt.hmm, score: 11.19) [Arabidopsis thaliana]
Length 1633 aa
position (link: detail on the area) subject position direction score
17976..18188 (1356..1426) + 127
17763..17957 (1284..1348) + 129
17595..17711 (1244..1282) + 87
17295..17408 (1150..1187) + 72
17088..17216 (1082..1124) + 113
16830..17063 (992..1069) + 224
16698..16835 (949..994) + 77
16203..16334 (733..776) + 110
15903..16172 (632..721) + 130
15711..15905 (571..635) + 275
13837..13544 (971..1068) - 307
13516..13124 (1082..1212) - 266
13072..13007 (1227..1248) - 75
13004..12903 (1250..1283) - 80
12855..12463 (1284..1414) - 370

gi|2642431[fasta] (AC002391) putative retrotransposon polyprotein [Arabidopsis thaliana]
Length 1496 aa
position (link: detail on the area) subject position direction score
17991..18194 (1420..1487) + 126
17595..17957 (1287..1407) + 223
17385..17513 (1221..1263) + 58
17085..17210 (1124..1165) + 95
16842..17066 (1044..1118) + 197
16698..16835 (997..1042) + 106
16200..16337 (736..781) + 87
15912..16199 (637..732) + 135
15696..15890 (567..631) + 143
15573..15692 (527..566) + 374
13834..13538 (1020..1118) - 310
13525..13112 (1122..1259) - 290
13078..13007 (1268..1291) - 78
13004..12891 (1293..1330) - 104
12870..12409 (1338..1491) - 398

gi|2194136[fasta] (AC002062) Strong similarity to Zea mays retrotransposon Hopscotch polyprotein (gb|U12626). [Arabidopsis thaliana]
Length 1315 aa
position (link: detail on the area) subject position direction score
17991..18203 (1239..1309) + 115
17595..17963 (1106..1228) + 215
17088..17216 (944..986) + 106
16848..17063 (860..931) + 205
16683..16835 (806..856) + 82
16200..16337 (641..686) + 103
15903..16193 (539..635) + 124
15720..15905 (481..542) + 103
15449..15535 (392..420) + 57
14566..14733 (35..90) + 43
13998..13822 (767..825) - 91
13831..13544 (835..930) - 283
13525..13124 (941..1074) - 300
13078..13007 (1087..1110) - 72
13004..12894 (1112..1148) - 71
12861..12406 (1160..1311) - 380

gi|3319362[fasta] (AF077408) contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
Length 964 aa
position (link: detail on the area) subject position direction score
75827..75672 (208..259) - 66
17991..18179 (890..952) + 137
17523..17957 (731..875) + 330
17295..17507 (652..722) + 107
16851..17216 (505..626) + 312
16644..16835 (437..500) + 135
16212..16493 (322..415) + 85
15696..16115 (150..289) + 237
15555..15692 (104..149) + 398
13882..13217 (462..683) - 409
12891..12655 (799..877) - 142
12642..12463 (884..943) - 99
11758..11582 (777..835) - 77
11576..11463 (838..875) - 72
11433..11380 (883..900) - 43

gi|2245104|gnl|PID|e327541[fasta] (Z97343) LTR retrotransposon [Arabidopsis thaliana]
Length 1433 aa
position (link: detail on the area) subject position direction score
17991..18173 (1355..1415) + 95
17595..17954 (1222..1341) + 252
17316..17408 (1135..1165) + 60
17088..17216 (1060..1102) + 94
16842..17063 (974..1047) + 207
16683..16835 (922..972) + 106
16200..16337 (778..823) + 108
15900..16193 (675..772) + 130
15768..15887 (634..673) + 380
13941..13834 (902..937) - 53
13831..13544 (951..1046) - 315
13525..13394 (1057..1100) - 137
13291..13100 (1135..1198) - 169
13096..13007 (1197..1226) - 92
13004..12894 (1228..1264) - 81
12873..12397 (1272..1430) - 369

gi|1169016|sp|P04146|COPI_DROME[fasta] COPIA PROTEIN
gi|7744 (X04456) ORF [Drosophila melanogaster]
Length 1409 aa
position (link: detail on the area) subject position direction score
75824..75660 (550..604) - 71
17991..18206 (1331..1402) + 118
17832..17972 (1277..1323) + 102
17550..17747 (1180..1245) + 142
17394..17528 (1132..1176) + 79
17082..17228 (1029..1077) + 106
16848..17078 (953..1029) + 210
16635..16820 (883..944) + 85
16125..16199 (636..660) + 73
15696..16112 (491..629) + 212
15476..15520 (412..426) + 59
13828..13541 (929..1024) - 271
13522..13388 (1029..1073) - 85
13324..13127 (1097..1162) - 93
12873..12805 (1247..1269) - 84
12786..12412 (1277..1401) - 258
11746..11675 (1221..1244) - 54
11588..11463 (1277..1318) - 83
15068..11392 (223..1337) - 41
15068..11392 (223..1337) - 41

gi|391657|gnl|PID|d1002178[fasta] (D10880) ORF [Drosophila simulans]
Length 1409 aa
position (link: detail on the area) subject position direction score
75824..75660 (550..604) - 71
17991..18206 (1331..1402) + 118
17832..17972 (1277..1323) + 107
17550..17747 (1180..1245) + 139
17394..17528 (1132..1176) + 79
17082..17228 (1029..1077) + 106
16848..17078 (953..1029) + 209
16635..16820 (883..944) + 85
16125..16199 (636..660) + 73
15696..16112 (491..629) + 212
15476..15520 (412..426) + 59
15068..15172 (223..257) + 259
13828..13541 (929..1024) - 276
13522..13388 (1029..1073) - 85
13324..13127 (1097..1162) - 92
12873..12805 (1247..1269) - 84
12786..12412 (1277..1401) - 259
11746..11675 (1221..1244) - 57
11588..11463 (1277..1318) - 73
11424..11392 (1327..1337) - 41

gi|2586082[fasta] (U72725) retrofit [Oryza longistaminata]
Length 1445 aa
position (link: detail on the area) subject position direction score
17970..18206 (1366..1444) + 104
17595..17957 (1240..1360) + 246
16842..17210 (994..1116) + 330
16680..16820 (941..987) + 102
16212..16337 (697..738) + 70
15963..16199 (611..689) + 98
15711..15875 (528..582) + 116
15470..15535 (449..470) + 59
15053..15145 (266..296) + 66
14584..14733 (90..139) + 370
13896..13825 (937..960) - 44
13825..13388 (973..1118) - 438
13291..13127 (1151..1205) - 137
13072..13007 (1223..1244) - 69
13004..12897 (1246..1281) - 69
12879..12406 (1288..1445) - 364

gi|224534|prf||1107279B[fasta] ORF g [Drosophila sp.]
Length 1410 aa
position (link: detail on the area) subject position direction score
75824..75660 (551..605) - 71
17991..18206 (1332..1403) + 118
17832..17972 (1278..1324) + 107
17550..17747 (1181..1246) + 142
17394..17528 (1133..1177) + 79
17082..17228 (1030..1078) + 106
16848..17078 (954..1030) + 210
16635..16820 (884..945) + 85
16125..16199 (637..661) + 73
15696..16112 (492..630) + 212
15476..15520 (413..427) + 59
13828..13541 (930..1025) - 271
13522..13388 (1030..1074) - 85
13324..13127 (1098..1163) - 93
12873..12805 (1248..1270) - 84
15068..12412 (224..1402) - 259
15068..12412 (224..1402) - 259

gi|74599|pir||OFFFCP[fasta] retrovirus-related polyprotein - fruit fly (Drosophila melanogaster) transposon copia
gi|950318 (M11240) unknown protein [Drosophila melanogaster]
gi|1491679|gnl|PID|e258482 (X02599) 31 KD polyprotein [Drosophila melanogaster]
Length 1409 aa
position (link: detail on the area) subject position direction score
75824..75660 (550..604) - 71
17991..18206 (1331..1402) + 118
17832..17972 (1277..1323) + 107
17550..17747 (1180..1245) + 142
17394..17528 (1132..1176) + 79
17082..17228 (1029..1077) + 106
16848..17078 (953..1029) + 210
16635..16820 (883..944) + 85
16125..16199 (636..660) + 73
15696..16112 (491..629) + 212
15476..15520 (412..426) + 59
15068..15172 (223..257) + 718
13828..13541 (929..1024) - 271
13522..13388 (1029..1073) - 85
13324..13127 (1097..1162) - 93
12873..12805 (1247..1269) - 84
12786..12412 (1277..1401) - 259

gi|3779026[fasta] (AC005171) putative retrotransposon [Arabidopsis thaliana]
Length 1413 aa
position (link: detail on the area) subject position direction score
17991..18173 (1337..1397) + 130
17628..17957 (1215..1324) + 185
17295..17384 (1188..1217) + 64
17082..17156 (1118..1142) + 93
16848..17063 (1041..1112) + 195
16680..16835 (986..1037) + 116
16194..16337 (744..791) + 91
15906..16202 (645..743) + 143
15696..15890 (577..641) + 206
13935..13813 (969..1009) - 73
13834..13544 (1015..1111) - 301
13525..13214 (1117..1220) - 195
12971..12897 (1221..1245) - 66
12885..12397 (1250..1412) - 396

gi|2244802|gnl|PID|e326892[fasta] (Z97336) retrovirus-related polyprotein homolog [Arabidopsis thaliana]
Length 1489 aa
position (link: detail on the area) subject position direction score
17976..18200 (1403..1477) + 125
17595..17957 (1275..1395) + 248
17292..17372 (1206..1232) + 60
17088..17168 (1166..1192) + 91
16830..17063 (1076..1153) + 207
16698..16835 (1033..1078) + 85
16203..16334 (812..855) + 113
15903..16196 (709..806) + 153
15711..15887 (648..706) + 406
13843..13544 (1053..1152) - 296
13549..13436 (1155..1192) - 83
13333..13223 (1200..1236) - 79
13165..13124 (1230..1243) - 37
13081..13007 (1255..1279) - 83
13004..12897 (1281..1316) - 69
12864..12397 (1328..1483) - 363

gi|531389[fasta] (U12626) copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length 1439 aa
position (link: detail on the area) subject position direction score
17991..18170 (1361..1420) + 98
17595..17957 (1228..1348) + 243
16842..17213 (982..1105) + 303
16701..16835 (936..980) + 90
16206..16334 (695..737) + 78
15900..16178 (590..682) + 123
15726..15890 (534..588) + 116
15395..15520 (425..466) + 61
14584..14733 (88..137) + 316
13896..13822 (925..949) - 44
13825..13112 (961..1198) - 543
13075..13007 (1210..1232) - 70
13004..12897 (1234..1269) - 63
12861..12463 (1282..1414) - 307

gi|2213582[fasta] (AC000348) T7N9.2 [Arabidopsis thaliana]
Length 1406 aa
position (link: detail on the area) subject position direction score
17967..18203 (1321..1399) + 122
17595..17948 (1196..1313) + 230
17301..17408 (1104..1139) + 61
16842..17063 (980..1053) + 181
16704..16808 (935..969) + 75
16212..16337 (767..808) + 101
15900..16193 (660..757) + 127
15696..15887 (595..658) + 147
13980..13831 (895..944) - 69
13834..13532 (956..1056) - 307
13291..13103 (1109..1171) - 152
13075..13007 (1178..1200) - 73
13004..12888 (1202..1240) - 82
12891..12406 (1240..1401) - 406

gi|3269282|gnl|PID|e1308241[fasta] (AL030978) putative protein [Arabidopsis thaliana]
Length 1318 aa
position (link: detail on the area) subject position direction score
17970..18173 (1141..1208) + 117
17595..17963 (1015..1137) + 196
16842..17228 (771..899) + 314
16704..16835 (726..769) + 76
16206..16334 (511..553) + 80
15696..16124 (337..479) + 204
15386..15514 (276..318) + 307
13944..13834 (698..734) - 44
13804..13127 (757..982) - 487
13093..13007 (991..1019) - 77
13004..12897 (1021..1056) - 75
12876..12415 (1064..1217) - 342

gi|950319[fasta] (M11240) unknown protein [Drosophila melanogaster]
Length 1017 aa
position (link: detail on the area) subject position direction score
75824..75660 (158..212) - 71
17991..18206 (939..1010) + 118
17832..17972 (885..931) + 107
17550..17747 (788..853) + 142
17394..17528 (740..784) + 79
17082..17228 (637..685) + 106
16848..17078 (561..637) + 210
16635..16820 (491..552) + 85
16125..16199 (244..268) + 73
15696..16112 (99..237) + 212
15476..15520 (20..34) + 102
13828..13541 (537..632) - 271
13522..13388 (637..681) - 85
13324..13127 (705..770) - 93
12873..12805 (855..877) - 84
12786..12412 (885..1009) - 259

gi|4234852[fasta] (AF082133) gag-pol polyprotein [Zea mays]
Length 1406 aa
position (link: detail on the area) subject position direction score
75770..75672 (599..631) - 61
17991..18173 (1333..1393) + 85
17517..17948 (1172..1315) + 313
17295..17486 (1095..1158) + 133
16842..17216 (945..1069) + 334
16656..16820 (884..938) + 99
16206..16298 (694..724) + 68
15903..16112 (591..660) + 103
15711..15890 (518..577) + 102
15476..15541 (442..463) + 61
15224..15325 (345..378) + 80
15092..15136 (256..270) + 320
13831..13394 (922..1067) - 353
13333..13214 (1088..1127) - 98
13004..12906 (1204..1236) - 63
12885..12679 (1244..1312) - 132
12642..12445 (1327..1392) - 96

gi|3935164[fasta] (AC004557) F17L21.7 [Arabidopsis thaliana]
Length 1558 aa
position (link: detail on the area) subject position direction score
17991..18173 (1483..1543) + 128
17595..17957 (1350..1470) + 218
17370..17507 (1279..1324) + 63
16827..17213 (1101..1229) + 297
16698..16820 (1059..1099) + 90
15927..16178 (725..808) + 109
15711..15890 (655..714) + 118
15591..15698 (617..652) + 72
15266..15313 (504..519) + 123
13899..13831 (1048..1070) - 50
13819..13394 (1087..1228) - 390
13297..13127 (1261..1317) - 131
13075..13007 (1332..1354) - 52
13004..12897 (1356..1391) - 74
12885..12406 (1396..1555) - 305

gi|99730|pir||S23315[fasta] hypothetical protein 3 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Kashmir) (fragment)
gi|1345512|gnl|PID|e73215 (X53975) orf 3 [Arabidopsis thaliana]
Length 494 aa
position (link: detail on the area) subject position direction score
16524..17930 (26..494) + 121
13756..13394 (134..254) - 302
13333..13214 (276..315) - 63
13004..12912 (389..419) - 64
12870..12688 (434..494) - 148

gi|3645899[fasta] (U68408) 5' end not determined experimentally [Zea mays]
Length 1068 aa
position (link: detail on the area) subject position direction score
75836..75690 (269..317) - 80
17586..18173 (857..1052) + 329
17409..17489 (802..828) + 61
16848..17216 (618..740) + 277
16212..16334 (389..429) + 73
15711..16214 (219..386) + 363
13819..13391 (597..739) - 364
13279..13118 (777..830) - 144
13072..13001 (843..866) - 57
12956..12894 (882..902) - 45
12873..12658 (910..981) - 211
12639..12409 (987..1063) - 156
11758..11645 (882..919) - 72
11606..11481 (933..974) - 64

gi|3600044[fasta] (AF080119) contains similarity to proteases [Arabidopsis thaliana]
Length 1392 aa
position (link: detail on the area) subject position direction score
17979..18173 (1225..1289) + 112
17595..17963 (1096..1218) + 182
17295..17372 (1004..1029) + 65
16842..17213 (854..977) + 308
16677..16835 (800..852) + 96
16206..16334 (700..742) + 68
15696..16121 (526..667) + 342
13801..13118 (841..1068) - 494
13090..13007 (1073..1100) - 93
13004..12897 (1102..1137) - 77
12885..12412 (1142..1299) - 322

gi|4234854[fasta] (AF082134) pol polyprotein [Zea mays]
Length 998 aa
position (link: detail on the area) subject position direction score
75770..75672 (191..223) - 61
17991..18173 (925..985) + 85
17517..17948 (764..907) + 313
17295..17486 (687..750) + 125
16842..17216 (537..661) + 341
16656..16820 (476..530) + 99
16206..16298 (286..316) + 68
15903..16112 (183..252) + 103
15711..15890 (110..169) + 102
15476..15541 (34..55) + 322
13831..13394 (514..659) - 360
13333..13214 (680..719) - 98
13004..12906 (796..828) - 63
12885..12679 (836..904) - 132
12642..12445 (919..984) - 96

gi|2865424[fasta] (AF039371) polyprotein [Arabidopsis thaliana]
Length 1451 aa
position (link: detail on the area) subject position direction score
17991..18173 (1376..1436) + 123
17586..17957 (1240..1363) + 227
16842..17210 (999..1121) + 286
16704..16838 (954..998) + 86
15912..16193 (605..698) + 97
15711..15890 (540..599) + 106
15440..15550 (451..487) + 813
13899..13831 (941..963) - 43
13819..13127 (980..1210) - 517
13084..13007 (1222..1247) - 61
13004..12891 (1249..1286) - 91
12861..12415 (1297..1445) - 325

gi|2865431[fasta] (AF039373) polyprotein [Arabidopsis thaliana]
Length 1451 aa
position (link: detail on the area) subject position direction score
17991..18173 (1376..1436) + 114
17586..17957 (1240..1363) + 227
16842..17210 (999..1121) + 284
16704..16838 (954..998) + 86
15912..16193 (605..698) + 97
15711..15890 (540..599) + 106
15440..15550 (451..487) + 340
13899..13831 (941..963) - 43
13819..13127 (980..1210) - 523
13084..13007 (1222..1247) - 61
13004..12891 (1249..1286) - 91
12861..12415 (1297..1445) - 316

gi|2865427[fasta] (AF039372) polyprotein [Arabidopsis thaliana]
Length 1451 aa
position (link: detail on the area) subject position direction score
17991..18173 (1376..1436) + 114
17586..17957 (1240..1363) + 227
16842..17210 (999..1121) + 286
16704..16838 (954..998) + 86
15912..16193 (605..698) + 97
15711..15890 (540..599) + 106
13899..13831 (941..963) - 43
13819..13127 (980..1210) - 517
13084..13007 (1222..1247) - 61
13004..12891 (1249..1286) - 91
15440..12415 (451..1445) - 316
15440..12415 (451..1445) - 316

gi|3777527[fasta] (AF053008) gag-pol polyprotein [Glycine max]
Length 1550 aa
position (link: detail on the area) subject position direction score
17586..18176 (1340..1536) + 332
17394..17507 (1280..1317) + 78
16842..17219 (1099..1224) + 276
16674..16838 (1044..1098) + 101
16200..16334 (907..951) + 63
15696..16196 (736..902) + 242
15470..15535 (658..679) + 305
13896..13834 (1042..1062) - 41
13828..13103 (1077..1318) - 438
13072..13007 (1326..1347) - 61
13004..12897 (1349..1384) - 62
12870..12652 (1394..1466) - 212
12633..12415 (1472..1544) - 160

gi|85105|pir||S00954[fasta] pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
gi|8702 (X07656) pol polypeptide (AA 1-982) [Drosophila melanogaster]
Length 982 aa
position (link: detail on the area) subject position direction score
17961..18068 (947..982) + 62
17754..17966 (875..945) + 157
17553..17732 (809..868) + 99
17280..17492 (720..790) + 87
16842..17210 (575..697) + 286
16653..16835 (513..573) + 107
15696..16190 (209..373) + 96
13899..13864 (514..525) - 40
13834..13223 (551..754) - 377
13204..13082 (763..803) - 55
12974..12921 (839..856) - 42
12864..12670 (875..939) - 164
12618..12547 (959..982) - 62
11758..11693 (845..866) - 70
11665..11588 (875..900) - 45
11576..11475 (905..938) - 73
11436..11335 (948..981) - 51

gi|3924609[fasta] (AF069442) putative polyprotein of LTR transposon [Arabidopsis thaliana]
Length 1456 aa
position (link: detail on the area) subject position direction score
17991..18176 (1374..1435) + 108
17595..17957 (1241..1361) + 218
16842..17213 (997..1120) + 310
15909..16193 (581..675) + 112
15711..15890 (517..576) + 110
15591..15698 (479..514) + 60
14587..14688 (88..121) + 335
13896..13831 (939..960) - 38
13828..13127 (975..1208) - 530
13093..13007 (1217..1245) - 65
13004..12891 (1247..1284) - 98
12861..12412 (1295..1444) - 328

gi|479178|pir||S32437[fasta] pol polyprotein - Volvox carteri f. nagariensis retrotransposon Osser
gi|288597 (X69552) gag,protease,endonuclease, reverse transcriptase,RNaseH [Volvox carteri]
Length 1462 aa
position (link: detail on the area) subject position direction score
75836..75681 (630..681) - 71
17748..18200 (1311..1461) + 299
17505..17729 (1229..1303) + 157
17364..17486 (1185..1225) + 70
17091..17222 (1095..1138) + 93
16974..17063 (1057..1086) + 110
16839..16973 (1013..1057) + 139
16659..16820 (954..1007) + 69
16203..16307 (746..780) + 66
15696..16100 (575..709) + 246
15488..15532 (500..514) + 107
13828..13640 (992..1054) - 163
13573..13394 (1075..1134) - 117
13004..12897 (1265..1300) - 82
12879..12664 (1308..1379) - 166
12639..12463 (1387..1445) - 123

gi|3021268|gnl|PID|e1285457[fasta] (AL022347) putative protein [Arabidopsis thaliana]
Length 1240 aa
position (link: detail on the area) subject position direction score
17991..18080 (524..553) + 73
17595..17963 (391..513) + 200
17088..17216 (229..271) + 104
16842..17063 (143..216) + 197
16683..16835 (91..141) + 364
13896..13822 (86..110) - 43
13831..13544 (120..215) - 291
13525..13394 (226..269) - 126
13327..13124 (292..359) - 181
13093..13007 (367..395) - 76
13004..12894 (397..433) - 80
12861..12532 (445..554) - 335

gi|4063762[fasta] (AC005561) putative retrotransposon [Arabidopsis thaliana]
Length 1102 aa
position (link: detail on the area) subject position direction score
18138..18194 (1075..1093) + 41
17991..18125 (1030..1074) + 98
17595..17948 (897..1014) + 214
17385..17513 (831..873) + 57
17283..17384 (799..832) + 50
17094..17210 (737..775) + 73
16842..17033 (676..739) + 176
16680..16835 (623..674) + 106
16200..16265 (469..490) + 43
16095..16199 (431..465) + 57
15912..16025 (387..424) + 61
15849..15890 (368..381) + 325
13834..13568 (652..740) - 270
13504..13112 (739..869) - 259
13099..13007 (871..901) - 76
13004..12897 (903..938) - 91
12885..12514 (943..1066) - 340

gi|3779021[fasta] (AC005171) putative reverse transcriptase [Arabidopsis thaliana]
Length 1402 aa
position (link: detail on the area) subject position direction score
17595..17957 (1226..1346) + 183
17283..17390 (1128..1163) + 61
16842..17228 (982..1110) + 296
16704..16835 (937..980) + 83
16212..16334 (708..748) + 83
15696..16115 (532..671) + 204
15591..15707 (498..536) + 68
15386..15514 (431..473) + 465
13944..13834 (909..945) - 47
13804..13127 (968..1193) - 466
13093..13007 (1202..1230) - 86
13004..12897 (1232..1267) - 72
12885..12580 (1272..1373) - 229

gi|3269281|gnl|PID|e1308240[fasta] (AL030978) putative protein [Arabidopsis thaliana]
Length 819 aa
position (link: detail on the area) subject position direction score
17970..18173 (642..709) + 117
17595..17963 (516..638) + 196
17388..17486 (451..483) + 37
17295..17357 (421..441) + 42
17082..17228 (362..410) + 113
16842..17054 (287..357) + 195
16704..16835 (242..285) + 127
13804..13550 (273..357) - 257
13507..13394 (367..404) - 110
13246..13127 (444..483) - 91
13093..13007 (492..520) - 77
13004..12897 (522..557) - 75
12876..12415 (565..718) - 342

gi|3695393[fasta] (AF096371) contains similarity to retroviral aspartyl proteases (Pfam: rvp.hmm, score: 11.80) [Arabidopsis thaliana]
Length 1244 aa
position (link: detail on the area) subject position direction score
17943..18200 (1152..1237) + 117
17595..17984 (1035..1164) + 212
16842..17072 (805..881) + 195
15900..16088 (661..723) + 78
15693..15887 (595..659) + 112
13810..13544 (789..877) - 252
13522..13424 (889..921) - 68
13291..13103 (948..1010) - 151
13090..13007 (1012..1039) - 83
13004..12894 (1041..1077) - 74
12864..12415 (1088..1237) - 351

gi|345511|pir||PC1232[fasta] retrovirus-related copia polyprotein - fruit fly (Drosophila simulans) (fragments)
Length 787 aa
position (link: detail on the area) subject position direction score
17991..18206 (709..780) + 118
17832..17972 (655..701) + 107
17736..17819 (622..649) + 56
17550..17747 (558..623) + 139
17394..17528 (510..554) + 79
17286..17378 (476..506) + 48
17082..17228 (407..455) + 106
16848..17078 (331..407) + 93
13810..13541 (313..402) - 265
13522..13388 (407..451) - 85
13324..13127 (475..540) - 92
12873..12805 (625..647) - 84
12786..12412 (655..779) - 259
11746..11675 (599..622) - 57
11588..11463 (655..696) - 73
11424..11392 (705..715) - 41

gi|2865437[fasta] (AF039376) polyprotein [Arabidopsis arenosa]
Length 1390 aa
position (link: detail on the area) subject position direction score
17595..17957 (1239..1359) + 222
16827..17210 (990..1117) + 286
16704..16820 (950..988) + 86
15912..16193 (605..698) + 101
15711..15890 (540..599) + 109
15440..15550 (451..487) + 396
13899..13831 (937..959) - 44
13819..13127 (976..1206) - 517
13081..13007 (1219..1243) - 58
13004..12891 (1245..1282) - 91
12861..12568 (1293..1390) - 225

gi|2245044|gnl|PID|e327020[fasta] (Z97342) similarity to reverse transcriptase - Arabidopsis thaliana retrotransposon 2 (fragment) [Arabidopsis thaliana]
Length 2088 aa
position (link: detail on the area) subject position direction score
17991..18182 (2013..2076) + 121
17754..17957 (1933..2000) + 119
17595..17696 (1898..1931) + 98
16827..17213 (1668..1796) + 311
16698..16766 (1627..1649) + 61
16212..16340 (1375..1417) + 67
15909..16193 (1271..1365) + 109
15789..15890 (1233..1266) + 68
15591..15710 (1185..1224) + 68
15446..15550 (1136..1170) + 160
13810..13376 (1657..1801) - 393
13327..13097 (1799..1875) - 149
13093..13007 (1874..1902) - 68
13004..12915 (1904..1933) - 66
12870..12406 (1931..2085) - 282

gi|99727|pir||S23313[fasta] hypothetical protein 1 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Kashmir) (fragment)
gi|1345510|gnl|PID|e73213 (X53975) orf 1 [Arabidopsis thaliana]
Length 560 aa
position (link: detail on the area) subject position direction score
15555..15824 (458..547) + 275
15164..15631 (328..483) + 479
15029..15169 (232..278) + 193
14918..15085 (193..248) + 161
14847..14918 (169..192) + 87
14359..14841 (6..166) + 369

gi|4239843|gnl|PID|d1038446[fasta] (AB014676) copia-like retrotransposable element [Bombyx mori]
Length 1316 aa
position (link: detail on the area) subject position direction score
17943..18170 (1230..1305) + 101
17745..17960 (1163..1234) + 128
17544..17732 (1095..1157) + 156
17388..17507 (1047..1086) + 66
17085..17216 (957..1000) + 114
16914..17072 (902..954) + 130
16704..16820 (841..879) + 64
15591..16106 (467..638) + 248
15470..15541 (435..458) + 64
14560..14796 (54..132) + 230
13831..13781 (863..879) - 53
13690..13535 (902..953) - 140
13519..13394 (957..998) - 95
13291..13115 (1025..1083) - 94
13004..12897 (1118..1153) - 67
12876..12412 (1162..1316) - 262

gi|4006831[fasta] (AC005970) putative reverse transcriptase [Arabidopsis thaliana]
Length 1200 aa
position (link: detail on the area) subject position direction score
75827..75693 (517..561) - 88
17991..18176 (1108..1169) + 152
17634..17798 (1037..1091) + 101
17295..17378 (948..975) + 61
16842..17114 (842..932) + 206
16674..16835 (787..840) + 99
15696..16289 (459..656) + 320
15443..15553 (373..409) + 63
15182..15337 (285..336) + 259
13867..13490 (807..932) - 284
13333..13127 (941..1009) - 110
12639..12403 (1103..1181) - 112

gi|1335694|gnl|PID|e1951[fasta] (X02600) unidentified open reading frame I (1289 aa) [Drosophila melanogaster]
Length 1289 aa
position (link: detail on the area) subject position direction score
17550..17747 (1181..1246) + 142
17394..17528 (1133..1177) + 79
17082..17228 (1030..1078) + 106
16848..17078 (954..1030) + 210
16635..16820 (884..945) + 85
16125..16199 (637..661) + 73
15696..16112 (492..630) + 212
15476..15520 (413..427) + 59
15068..15172 (224..258) + 200
13828..13541 (930..1025) - 271
13522..13388 (1030..1074) - 85
13324..13127 (1098..1163) - 93

gi|2865202[fasta] (U19263) ORF [Saccharomyces paradoxus]
Length 1626 aa
position (link: detail on the area) subject position direction score
75827..75696 (610..653) - 73
17856..18179 (1506..1613) + 203
17550..17852 (1403..1503) + 177
16851..17231 (1175..1301) + 253
16692..16820 (1128..1170) + 77
16209..16334 (730..771) + 81
15816..16145 (592..701) + 262
13753..13373 (1175..1301) - 258
12861..12748 (1472..1509) - 83
12765..12658 (1505..1540) - 59
12633..12463 (1548..1604) - 127

gi|1916937[fasta] (U90320) reverse transcriptase, gag, polyprotein [Volvox carteri f. nagariensis]
Length 1350 aa
position (link: detail on the area) subject position direction score
75836..75672 (575..629) - 91
17805..18173 (1218..1340) + 249
17523..17648 (1126..1167) + 94
17091..17216 (986..1027) + 69
16839..17063 (903..977) + 207
16626..16835 (833..902) + 98
16272..16400 (713..755) + 60
15711..16106 (525..656) + 194
14560..14796 (46..124) + 329
13828..13544 (882..976) - 196
13510..13394 (987..1025) - 99
12828..12652 (1213..1271) - 136
12624..12463 (1280..1333) - 100

gi|421955|pir||S25787[fasta] hypothetical protein 4 - potato transposon Tst1
gi|21434 (X52387) ORF4 [Solanum tuberosum]
Length 390 aa
position (link: detail on the area) subject position direction score
17991..18053 (324..344) + 53
17595..17957 (191..311) + 228
17388..17501 (128..165) + 51
17085..17390 (29..130) + 170
16998..17066 (1..23) + 158
13606..13538 (1..23) - 94
13573..13373 (11..77) - 122
13333..13094 (92..171) - 212
13072..13007 (174..195) - 71
13004..12867 (197..242) - 79
12885..12517 (237..359) - 329
11606..11436 (264..320) - 73

gi|4185312[fasta] (AF090446) copia protein [Zea mays]
Length 447 aa
position (link: detail on the area) subject position direction score
17586..18080 (282..446) + 289
17553..17582 (272..281) + 37
17409..17495 (227..255) + 59
17298..17378 (192..218) + 44
16848..17216 (43..165) + 276
16782..16838 (22..40) + 35
16716..16790 (1..25) + 182
13819..13391 (22..164) - 364
13279..13127 (202..252) - 131
13072..13001 (268..291) - 57
12956..12894 (307..327) - 45
12879..12658 (333..406) - 214
12639..12535 (412..446) - 102

gi|1769898|gnl|PID|e283238[fasta] (Y08010) lectin receptor kinase [Arabidopsis thaliana]
Length 623 aa
position (link: detail on the area) subject position direction score
75827..75660 (92..147) - 103
17388..17507 (571..610) + 67
17298..17378 (543..569) + 65
16839..17216 (391..516) + 332
16674..16835 (337..390) + 102
16200..16337 (205..250) + 107
15711..16199 (39..201) + 41
13831..13094 (369..614) - 465

gi|2415368[fasta] (AF015276) protease/reverse transcriptase [Volvox carteri]
Length 1053 aa
position (link: detail on the area) subject position direction score
17754..18173 (904..1043) + 251
17517..17618 (820..853) + 65
17328..17486 (758..810) + 96
16848..17102 (600..684) + 193
16653..16820 (537..592) + 104
15191..15376 (333..394) + 574
13828..13760 (577..599) - 50
13756..13544 (600..670) - 170
13525..13217 (676..778) - 160
13225..13127 (778..810) - 49
13072..13028 (828..842) - 44
12998..12897 (860..893) - 56
12864..12655 (904..973) - 173
12651..12463 (974..1036) - 103

gi|2462935|gnl|PID|e353245[fasta] (Y12321) open reading frame 1 [Brassica oleracea]
Length 1131 aa
position (link: detail on the area) subject position direction score
17088..17228 (1035..1081) + 117
16842..17063 (950..1023) + 188
16683..16835 (898..948) + 102
16200..16337 (752..797) + 114
15903..16193 (650..746) + 114
15696..15887 (584..647) + 114
15591..15692 (550..583) + 137
13980..13822 (865..917) - 59
13831..13544 (927..1022) - 286
13525..13238 (1032..1127) - 185

gi|3650035[fasta] (AC005396) putative reverse transcriptase [Arabidopsis thaliana]
Length 1149 aa
position (link: detail on the area) subject position direction score
16842..17213 (911..1034) + 329
16206..16340 (688..732) + 92
15696..16115 (514..653) + 41
13786..13127 (903..1122) - 461

gi|3250687|gnl|PID|e1301049[fasta] (AL024486) putative LTR retrotransposon (fragment) [Arabidopsis thaliana]
Length 306 aa
position (link: detail on the area) subject position direction score
17988..18173 (227..288) + 88
17595..17954 (95..214) + 256
17538..17591 (77..94) + 38
17388..17507 (30..69) + 39
17316..17408 (8..38) + 41
13291..13100 (8..71) - 169
13096..13007 (70..99) - 92
13004..12894 (101..137) - 86
12873..12397 (145..303) - 364

gi|4249381[fasta] (AC005966) Strong similarity to gb|AF039376 Evelknievel retrotransposon polyprotein from Arabidopsis arenosa. [Arabidopsis thaliana]
Length 1194 aa
position (link: detail on the area) subject position direction score
16830..17219 (952..1081) + 282
16704..16835 (911..954) + 75
15912..16193 (560..653) + 100
15711..15890 (495..554) + 98
15591..15707 (457..495) + 65
15476..15541 (418..439) + 123
13899..13831 (898..920) - 45
13810..13127 (940..1167) - 505

gi|553073[fasta] (M94481) reverse transcriptase [Zea mays]
Length 700 aa
position (link: detail on the area) subject position direction score
16842..17213 (452..575) + 296
16704..16835 (407..450) + 85
16212..16277 (117..138) + 56
15873..16193 (1..107) + 110
13828..13394 (430..574) - 343
13312..13112 (602..668) - 121
13096..13007 (671..700) - 63

gi|283051|pir||S27768[fasta] RNA-directed DNA polymerase (EC 2.7.7.49) - maize transposon (fragment)
Length 699 aa
position (link: detail on the area) subject position direction score
16842..17213 (452..575) + 296
16704..16835 (407..450) + 85
16212..16277 (117..138) + 56
15873..16193 (1..107) + 63
13828..13394 (430..574) - 343
13312..13112 (602..668) - 121
13096..13019 (671..696) - 62

gi|2244959|gnl|PID|e326966[fasta] (Z97340) similar to B.vulgaris CMS-associated mitochondrial ... (reverse transcriptase) [Arabidopsis thaliana]
Length 1942 aa
position (link: detail on the area) subject position direction score
16842..17213 (865..988) + 301
16842..17213 (1765..1888) + 301
16704..16835 (820..863) + 75
16704..16835 (1720..1763) + 75
16206..16340 (581..625) + 93
16206..16340 (1481..1525) + 93
15696..15890 (1353..1417) + 96
15696..15890 (453..517) + 152
13804..13394 (851..987) - 349
13804..13394 (1751..1887) - 349
13291..13232 (1922..1941) - 56

gi|2462936|gnl|PID|e353246[fasta] (Y12321) open reading frame 2 [Brassica oleracea]
Length 253 aa
position (link: detail on the area) subject position direction score
17988..18176 (176..238) + 114
17595..17984 (44..173) + 231
17553..17591 (31..43) + 105
13090..13007 (21..48) - 86
13004..12894 (50..86) - 72
12864..12421 (97..244) - 358

gi|2827718|gnl|PID|e1248853[fasta] (AL021684) retrotransposon - like protein [Arabidopsis thaliana]
Length 1021 aa
position (link: detail on the area) subject position direction score
17991..18173 (235..295) + 114
17595..17957 (102..222) + 200
17538..17582 (84..98) + 36
17385..17507 (36..76) + 95
13330..13112 (2..74) - 147
13072..13007 (85..106) - 58
13004..12894 (108..144) - 70
12861..12418 (156..303) - 316

gi|99729|pir||S23314[fasta] hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Kashmir) (fragment)
gi|1345511|gnl|PID|e73214 (X53975) orf 2 [Arabidopsis thaliana]
Length 238 aa
position (link: detail on the area) subject position direction score
15756..16352 (1..199) + 230

gi|421954|pir||S25786[fasta] hypothetical protein 3 - potato transposon Tst1
gi|21433 (X52387) ORF3 [Solanum tuberosum]
Length 675 aa
position (link: detail on the area) subject position direction score
16842..16985 (628..675) + 95
16701..16835 (582..626) + 104
16206..16346 (345..391) + 82
15696..16154 (169..321) + 117
13998..13822 (537..595) - 65
13834..13619 (604..675) - 231

gi|2244960|gnl|PID|e326967[fasta] (Z97340) similarity to copia-like retrotransposon [Arabidopsis thaliana]
Length 326 aa
position (link: detail on the area) subject position direction score
17973..18173 (183..249) + 114
17742..17957 (105..176) + 37
13102..13007 (17..48) - 72
13004..12897 (50..85) - 78
12861..12415 (110..258) - 340

gi|2244942|gnl|PID|e326955[fasta] (Z97339) similarity to hypothetical protein [Arabidopsis thaliana]
Length 237 aa
position (link: detail on the area) subject position direction score
17991..18152 (118..171) + 92
16848..17063 (23..94) + 87
13759..13544 (22..93) - 216
12633..12463 (115..171) - 159

gi|498931[fasta] (Z12825) ORF167; homologous to reverse transcriptases from retroviral-like transposons TNT 1-94 from tobacco and COPIA from Drosophila [Beta vulgaris]
Length 167 aa
position (link: detail on the area) subject position direction score
16848..17213 (16..137) + 88
13798..13394 (2..136) - 345

gi|3273766[fasta] (AF065434) reverse transcriptase [Candida albicans]
Length 381 aa
position (link: detail on the area) subject position direction score
17283..17414 (329..372) + 55
16848..17219 (187..310) + 279
16641..16820 (124..183) + 49
13935..13870 (117..138) - 39
13843..13781 (163..183) - 63
13756..13406 (187..303) - 261
13312..13187 (333..374) - 55

gi|2636719[fasta] (AF007776) POL protein [Candida albicans]
Length 1576 aa
position (link: detail on the area) subject position direction score
18063..18188 (1513..1554) + 63
17799..18035 (1426..1504) + 107
17553..17732 (1339..1398) + 87
17388..17543 (1268..1319) + 51
17094..17393 (1172..1271) + 88
16911..17027 (1111..1149) + 60
16704..16823 (1042..1081) + 35
13705..13373 (1107..1217) - 121
13291..13172 (1246..1285) - 79
12828..12652 (1423..1481) - 106

gi|3273718[fasta] (AF050215) pol polyprotein [Candida albicans]
Length 1576 aa
position (link: detail on the area) subject position direction score
18063..18188 (1513..1554) + 63
17799..18035 (1426..1504) + 107
17553..17732 (1339..1398) + 87
17388..17543 (1268..1319) + 51
17094..17393 (1172..1271) + 87
16911..17027 (1111..1149) + 60
16704..16823 (1042..1081) + 107
13705..13373 (1107..1217) - 121
13291..13172 (1246..1285) - 79
12828..12652 (1423..1481) - 106

gi|1785739|gnl|PID|e283457[fasta] (Y08502) orf240b [Arabidopsis thaliana]
Length 240 aa
position (link: detail on the area) subject position direction score
17595..17933 (113..225) + 194
17403..17486 (54..81) + 52
17283..17378 (16..47) + 60
13291..13127 (27..81) - 136
13132..13007 (76..117) - 63
13004..12891 (119..156) - 72
12885..12676 (159..228) - 188

gi|140418|sp|P25600|YCH4_YEAST[fasta] TRANSPOSON TY5-1 34.5 KD HYPOTHETICAL PROTEIN
gi|83188|pir||S19406 hypothetical protein YCL074w - yeast (Saccharomyces cerevisiae)
gi|5285|gnl|PID|e264616 (X59720) YCL074w, len:308; not real ORF - included in pseudogene [Saccharomyces cerevisiae]
Length 308 aa
position (link: detail on the area) subject position direction score
17856..17924 (285..307) + 49
17550..17852 (182..282) + 180
17379..17486 (128..163) + 41
17301..17378 (103..128) + 53
16992..17231 (1..80) + 117
13612..13373 (1..80) - 140
13300..13211 (105..134) - 57
12861..12748 (251..288) - 83

gi|539014|pir||E53226[fasta] reverse transcriptase (copia-like retrotransposon) Ta5 - Arabidopsis thaliana (fragment)
Length 89 aa
position (link: detail on the area) subject position direction score
17001..17237 (1..79) + 115
13603..13373 (1..77) - 148

gi|539015|pir||F53226[fasta] reverse transcriptase (copia-like retrotransposon) Ta6 - Arabidopsis thaliana (fragment)
Length 89 aa
position (link: detail on the area) subject position direction score
17001..17234 (1..78) + 345
13603..13394 (1..70) - 152

gi|2146769|pir||S71291[fasta] reverse transcriptase (clone Rtat3) - Arabidopsis thaliana Ty1-copia-like retrotransposon (fragment)
gi|1171494|gnl|PID|e220189 (Z68911) reverse transcriptase [Arabidopsis thaliana]
Length 88 aa
position (link: detail on the area) subject position direction score
17004..17234 (1..77) + 43
13597..13394 (2..69) - 136

gi|99726|pir||S23320[fasta] hypothetical protein 3 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Landsberg) (fragment)
gi|1345515|gnl|PID|e32696 (X53976) orf 3 [Arabidopsis thaliana]
Length 154 aa
position (link: detail on the area) subject position direction score
17682..18107 (1..142) + 62
12870..12652 (23..95) - 198
12639..12520 (99..138) - 100

gi|2997694[fasta] (AF053721) putative retrovirus-related polyprotein [Lithospermum erythrorhizon]
Length 244 aa
position (link: detail on the area) subject position direction score
15696..15890 (177..241) + 175
15555..15704 (131..180) + 122
15485..15550 (108..129) + 64
15185..15445 (4..90) + 119

gi|320565|pir||A60767[fasta] transposon TA1-1 KAS-1 - Arabidopsis thaliana (fragment)
Length 113 aa
position (link: detail on the area) subject position direction score
17874..18206 (1..111) + 139
12744..12652 (1..31) - 80
12639..12463 (35..93) - 102

gi|99726|pir||S23320[fasta] hypothetical protein 3 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Landsberg) (fragment)
gi|1345515|gnl|PID|e32696 (X53976) orf 3 [Arabidopsis thaliana]
Length 154 aa
position (link: detail on the area) subject position direction score
17682..18107 (1..142) + 62
12870..12652 (23..95) - 198
12639..12520 (99..138) - 100

gi|320565|pir||A60767[fasta] transposon TA1-1 KAS-1 - Arabidopsis thaliana (fragment)
Length 113 aa
position (link: detail on the area) subject position direction score
17874..18206 (1..111) + 139
12744..12652 (1..31) - 80
12639..12463 (35..93) - 102

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