information on T27D20    (40638..41244)

Direction: +

Frame: 1

ORF

    40387..41241  (Met: 40435 40570 40639 40696 40735 40918 41074 41104)
SRGVHGLGATDGVHLRMLWYGESRKVSLAAAQLTENALSGWDRTVADRRRKRFGPINTWG
DMKYLLRLRYVPDHYHKDLQKYFRMLSQGTRTVDEYFEEFEKLMNALELEESDEALMAQF
IDGLQERIQRKVERAQYNGLHELLHLAVQVEQQIRRKASLSNRSRNNTPWNASNNRAMDK
SKVVESDHRFKNKSNEAPKTSRPKLGKFPSTNQSRSRYITCFKCQGRGHMARECLNQRVM
ILTPSGDYESQDEQEDSDEHEDIEYPDVGELLVIRRTLSVFVNLE

GenBank annotation

    40097..41244    T27D20.19

BLASTX cluster

    40570..43464    cluster 7    45 hits for protein gene

BLASTN cluster

    None

GENSCAN

    40052..46670    gene model 9
    40052..46670    gene model 9
    Suboptimal exon

        40638..41221    Intr    Phase: 2    Score: 0.155
        40652..41002    Intr    Phase: 1    Score: 0.158

Grail

    40483..40592    exon    Phase: 0    Score: 46
    40639..41221    exon    Phase: 0    Score: 86

Exon-Intron boundary candidatates

Acceptor
40392 [0.006] (2) 40462 [0.001] (0) 40475 [0.066] (1) 40515 [0.001] (2)
40530 [0.001] (2) 40638 [0.96N] (2) 40652 [0.011] (1) 40659 [0.007] (2)
40693 [0.001] (0) 40751 [0.009] (1) 40763 [0.001] (1) 40843 [0.003] (0)
40851 [0.002] (2) 40992 [0.001] (2) 41063 [0.90N/0.618] (1) 41067 [0.007] (2)
41192 [0.001] (1) 41214 [0.058] (2)
Donor
40442 [0.015] (2) 40586 [0.024] (2) 40592 [1.00N/0.963] (2) 40852 [0.031] (1)
40932 [0.037] (0) 40952 [0.021] (2) 41002 [1.00N/0.962] (1) 41014 [0.006] (1)
41221 [0.007] (1)

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