information on T27D20
(40638..41244)
Direction: +
Frame: 1
ORF
40387..41241 (Met: 40435 40570 40639 40696 40735 40918 41074 41104)
SRGVHGLGATDGVHLRMLWYGESRKVSLAAAQLTENALSGWDRTVADRRRKRFGPINTWG
DMKYLLRLRYVPDHYHKDLQKYFRMLSQGTRTVDEYFEEFEKLMNALELEESDEALMAQF
IDGLQERIQRKVERAQYNGLHELLHLAVQVEQQIRRKASLSNRSRNNTPWNASNNRAMDK
SKVVESDHRFKNKSNEAPKTSRPKLGKFPSTNQSRSRYITCFKCQGRGHMARECLNQRVM
ILTPSGDYESQDEQEDSDEHEDIEYPDVGELLVIRRTLSVFVNLE
GenBank annotation
40097..41244 T27D20.19
BLASTX cluster
40570..43464 cluster 7 45 hits for protein gene
BLASTN cluster
None
GENSCAN
40052..46670 gene model 9
40052..46670 gene model 9
Suboptimal exon
40638..41221 Intr Phase: 2 Score: 0.155
40652..41002 Intr Phase: 1 Score: 0.158
Grail
40483..40592 exon Phase: 0 Score: 46
40639..41221 exon Phase: 0 Score: 86
Exon-Intron boundary candidatates
Acceptor |
40392 [0.006] (2) |
40462 [0.001] (0) |
40475 [0.066] (1) |
40515 [0.001] (2) |
40530 [0.001] (2) |
40638 [0.96N] (2) |
40652 [0.011] (1) |
40659 [0.007] (2) |
40693 [0.001] (0) |
40751 [0.009] (1) |
40763 [0.001] (1) |
40843 [0.003] (0) |
40851 [0.002] (2) |
40992 [0.001] (2) |
41063 [0.90N/0.618] (1) |
41067 [0.007] (2) |
41192 [0.001] (1) |
41214 [0.058] (2) |
Donor |
40442 [0.015] (2) |
40586 [0.024] (2) |
40592 [1.00N/0.963] (2) |
40852 [0.031] (1) |
40932 [0.037] (0) |
40952 [0.021] (2) |
41002 [1.00N/0.962] (1) |
41014 [0.006] (1) |
41221 [0.007] (1) |
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