information on T25K17    (83919..84155)

Direction: +

Frame: 3

ORF

    82143..85280  (Met: 82188 82209 82455 82512 82545 82551 82704 82725 82746 82773 82845 83085 83178 83214 83268 83307 83346 83550 83676 83946 84090 84498 84582 84672 84771 84945 84981 85080 85143 85170 85191)
SSLIPLINIQTIPFSMDSESELMISLISQLLSILGGGEDTHTPQLKSKLIALTCQLISLV
NSLDLDSQPEPESKLKSLIKQIIYVSNSVSEPGPESQSVSVVTKMISIIGSIDFDLKESE
PELMSLTSQIFALIMAMDEESELFSLLSEVASLVQTEEQKLINNQQVPPLTTEEEEKDDL
IYGYTDDMNWESELMFYIISKMISTLRGEDMCQEVARDFIAYANQLIPLIESLDMDSNSE
PKQEPKITSLVRQIISLSKVVSGPESQLVSLVTRIISITSSTDLDPTESQWRLTSVTYKI
SRILKEIKDSEDSEMASLINQIHDLVDAEEGRKPESRLISSITQLMSHINSWSFYSGMDP
KIISLIIRIIYLVRSMDLDSQTKPKSELMSLVTQTIAVYNSMDLDSQPRPLRKVVSVFSQ
YGFDVNSTVSDSESDSSENYVSHIKDSLKLEPEPELISFIHRIGSLVISMNPNWEKLISF
CPQFEVILSDDGKFQVEEGRLSKNQLSDDIPMKWNCLQVNWNLLKLHAGEKDFTHFRCRG
CNGDNHKENEKAPLEVKHPLHPKHPLQLVLSQSSGGRTRECYCCDEDLLHIFYCCLACNF
SMNVACTKKPAVLYRNHPRWHEHTLALFPRQASLTCNLCALADSSSPIYMCPPCDFVVHL
RCTGLPRVIKISRHLHRISFTFSFDRGDLSCSVCRRKIDEDYGGYTCIKDGCSYAAHSKC
ATQKNVWDGIELEGEPEEVEEEVVDPFVTISDGVIQHFGHPQHHLRLDENTSRDYDEDKL
CQACVMPIYFGNFYSCTQCNYILHEACANFSRKMHHPVHPHVLTLVNSDGAINVRKECAA
CPWMCTTGFFYECSKEDFQLHVQCANLSEPLVHESHMHPLFLTSKPGERRLCSACKESYF
SVTRETFNCIECDFALCFRCATLPQKVRYKHDKHMLTLSYGEETSTMTYWCEVCERNLNP
KERFYKCDEYCSITLHIECMLGVALYIRPGSSWICFNNKKMYVLPNNHHMSRPRCFMCKK
RCPQKIVFKYDEVIFCTQKCRGKYRY

GenBank annotation

    None

BLASTX cluster

    80428..85667    cluster 15    19 hits for protein gene

BLASTN cluster

    None

GENSCAN

    82188..85667    gene model 19
    Suboptimal exon

        82188..85228    Init    Phase: 0    Score: 0.107
        82188..85238    Init    Phase: 0    Score: 0.313

Grail

    82188..83023    exon    Phase: 0    Score: 86
    83085..83384    exon    Phase: 0    Score: 85
    83440..83696    exon    Phase: 1    Score: 50
    83987..84528    exon    Phase: 2    Score: 67
    84582..84765    exon    Phase: 0    Score: 44
    84899..84925    exon    Phase: 2    Score: 20

Exon-Intron boundary candidatates

Acceptor
82246 [0.88N/0.422] (1) 82347 [0.053] (0) 82386 [0.021] (0) 82400 [0.032] (2)
82414 [0.092] (1) 82420 [0.134] (1) 82480 [0.026] (1) 82494 [0.012] (0)
82501 [0.003] (1) 82590 [0.001] (0) 82598 [0.005] (2) 82608 [0.009] (0)
82763 [0.001] (2) 82765 [0.002] (1) 82785 [0.001] (0) 82861 [0.081] (1)
82872 [0.013] (0) 82936 [0.012] (1) 82982 [0.021] (2) 82990 [0.009] (1)
83128 [0.69N/0.019] (1) 83212 [0.88N/0.354] (1) 83264 [0.65N/0.058] (2) 83286 [0.315] (0)
83364 [0.008] (0) 83403 [0.006] (0) 83428 [0.87N/0.111] (1) 83440 [0.023] (1)
83479 [0.001] (1) 83533 [0.024] (1) 83599 [0.001] (1) 83638 [0.001] (1)
83697 [0.016] (0) 83718 [0.001] (0) 83728 [0.160] (1) 83761 [0.003] (1)
83956 [0.587] (1) 83967 [0.002] (0) 83970 [0.029] (0) 83974 [0.006] (1)
83987 [0.041] (2) 84032 [0.003] (2) 84036 [0.035] (0) 84205 [0.86N] (1)
84218 [0.035] (2) 84230 [0.736] (2) 84238 [0.009] (1) 84704 [0.198] (2)
84720 [0.118] (0) 84732 [0.033] (0) 84802 [0.003] (1) 84899 [0.87N/0.025] (2)
84921 [0.054] (0) 85106 [0.037] (2) 85265 [0.078] (2)
Donor
82436 [0.015] (0) 82445 [0.050] (0) 82764 [0.006] (1) 82919 [0.069] (0)
82946 [0.004] (0) 83023 [1.00N/0.588] (2) 83258 [0.007] (0) 83381 [0.137] (0)
83401 [0.030] (2) 83414 [0.042] (0) 83451 [0.006] (1) 83696 [0.96N/0.934] (0)
84171 [0.74N/0.066] (1) 84280 [0.005] (2) 84513 [0.88N/0.030] (1) 84528 [0.012] (1)
84593 [1.00N/0.066] (0) 84641 [0.008] (0) 84835 [0.004] (2) 84920 [0.016] (0)
84991 [0.006] (2) 85077 [0.023] (1) 85110 [0.018] (1) 85144 [0.74N/0.042] (2)
85194 [0.055] (1) 85228 [0.044] (2) 85238 [0.84N/0.007] (0)

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