BLASTX alignment cluster 12    (68240..76485)


Local alignments in this cluster

gi|3046704|emb|CAA18234|[fasta] (AL022223) putative protein [Arabidopsis thaliana]
Length 1141 aa

position (link: detail on the area) subject position direction score

76485..75094 (1..464) - 269
75054..73792 (464..884) - 2178
73762..73169 (884..1081) - 1041
73061..72876 (1080..1141) - 325


gi|4512630|gb|AAD21699.1|[fasta] (AC004793) Contains reverse transcriptase domain (rvt) PF|00078. [Arabidopsis thaliana]
Length 1253 aa

position (link: detail on the area) subject position direction score

76200..74833 (53..508) - 191
74919..74257 (484..704) - 863
74202..74146 (703..721) - 65
74158..73874 (718..812) - 378
73693..73418 (812..903) - 178
73418..72933 (904..1065) - 582


gi|4539431|emb|CAB38964.1|[fasta] (T25K17) putative protein [Arabidopsis thaliana]
Length 431 aa

position (link: detail on the area) subject position direction score

72132..72422 (335..431) + 520
71894..72043 (285..334) + 259
70963..71868 (1..302) + 1539
69388..69666 (336..428) + 274
69158..69289 (289..332) + 124
69005..69079 (266..290) + 64
68855..69007 (217..267) + 65
68657..68806 (140..189) + 133
68546..68644 (101..133) + 66
68489..68575 (84..112) + 79
68411..68476 (55..76) + 84
68291..68380 (18..47) + 348


gi|3319372[fasta] (AF077409) similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13) [Arabidopsis thaliana]
Length 1164 aa

position (link: detail on the area) subject position direction score

76200..74155 (1..682) - 325
74158..73835 (682..789) - 372
73786..73418 (807..929) - 336
73418..73176 (930..1010) - 276


gi|4539430|emb|CAB38963.1|[fasta] (T25K17) putative protein [Arabidopsis thaliana]
Length 374 aa

position (link: detail on the area) subject position direction score

72135..72413 (282..374) + 274
71758..71829 (256..279) + 60
71611..71763 (206..256) + 65
71380..71529 (140..189) + 133
71212..71298 (84..112) + 79
71125..71190 (58..79) + 84
70963..71103 (1..47) + 164
69382..69666 (280..374) + 500
68240..69076 (1..279) + 143


gi|3461840[fasta] (AC005315) putative reverse transcriptase [Arabidopsis thaliana]
Length 1529 aa

position (link: detail on the area) subject position direction score

76305..76039 (428..516) - 1038
75804..75694 (535..571) - 71
75681..75268 (579..716) - 203
75282..74269 (713..1050) - 752
74265..74158 (1053..1088) - 102
74155..73838 (1090..1195) - 297
73753..73562 (1225..1288) - 112
73418..73143 (1336..1427) - 207
73040..72924 (1462..1500) - 81


gi|4006833[fasta] (AC005970) putative reverse transcriptase [Arabidopsis thaliana]
Length 1352 aa

position (link: detail on the area) subject position direction score

76413..76033 (268..394) - 71
76026..75694 (398..508) - 222
75468..75301 (557..612) - 90
75129..74260 (614..903) - 687
74277..74155 (899..939) - 94
74158..73775 (939..1066) - 251
73753..73553 (1075..1141) - 127
73418..73164 (1185..1269) - 211


gi|4263828|gb|AAD15471|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1277 aa

position (link: detail on the area) subject position direction score

76341..76039 (301..401) - 629
76014..75730 (411..505) - 205
75468..75268 (525..591) - 108
75282..75100 (588..648) - 87
75000..74260 (652..898) - 590
74283..74155 (892..934) - 109
74158..73781 (934..1059) - 285
73753..73562 (1070..1133) - 105
73040..72924 (1216..1254) - 79


gi|3004545[fasta] (AC003673) putative reverse transcriptase [Arabidopsis thaliana]
gi|4185148 (AC005724) putative reverse transcriptase [Arabidopsis thaliana]
Length 1412 aa

position (link: detail on the area) subject position direction score

76413..76039 (333..457) - 688
76038..75694 (459..573) - 169
75681..75484 (581..646) - 65
75276..74596 (684..910) - 514
74583..74254 (904..1013) - 219
74262..74155 (1012..1047) - 106
74158..73850 (1047..1149) - 260
73418..72924 (1221..1385) - 277


gi|3047086[fasta] (AF058914) similar to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31) [Arabidopsis thaliana]
Length 928 aa

position (link: detail on the area) subject position direction score

76164..76045 (2..41) - 98
76014..75790 (53..127) - 161
75783..75685 (133..165) - 67
75681..75271 (170..306) - 195
75261..74281 (311..637) - 738
74253..74146 (648..683) - 84
74158..73919 (680..759) - 217
73364..73134 (761..837) - 174
73040..72927 (869..906) - 69


gi|3785984[fasta] (AC005560) putative reverse transcriptase [Arabidopsis thaliana]
Length 1449 aa

position (link: detail on the area) subject position direction score

76443..76042 (436..569) - 602
76014..75745 (580..669) - 166
75681..75271 (697..833) - 175
75261..74566 (838..1069) - 496
74170..73883 (1067..1162) - 248
73720..73565 (1165..1216) - 104
73418..73155 (1264..1351) - 208


gi|3176712[fasta] (AC002392) putative zinc-finger protein [Arabidopsis thaliana]
Length 1447 aa

position (link: detail on the area) subject position direction score

76389..76042 (447..562) - 519
76026..75745 (569..662) - 144
75681..75271 (690..826) - 187
75261..74788 (831..988) - 312
74625..74461 (989..1043) - 147
74238..74155 (1037..1064) - 79
74158..74033 (1064..1105) - 98
73753..73568 (1152..1213) - 117
73418..73164 (1262..1346) - 225
73067..72924 (1379..1426) - 79


gi|3738337[fasta] (AC005170) putative reverse transcriptase [Arabidopsis thaliana]
Length 1216 aa

position (link: detail on the area) subject position direction score

75420..75271 (90..139) - 93
75237..74254 (152..479) - 716
74253..74155 (481..513) - 95
74158..73775 (513..640) - 245
73753..73565 (649..711) - 121
73418..73164 (760..844) - 183
73067..72924 (877..924) - 68
70963..71103 (1..47) + 547


gi|4432866|gb|AAD20714|[fasta] (AC006300) putative reverse transcriptase [Arabidopsis thaliana]
Length 1750 aa

position (link: detail on the area) subject position direction score

76011..75703 (539..641) - 86
75468..75268 (714..780) - 143
75186..74764 (805..945) - 284
74742..74464 (955..1047) - 208
74439..74305 (1057..1101) - 71
74158..73994 (1153..1207) - 95
73954..73679 (1221..1312) - 80
73394..73098 (1414..1512) - 125
73037..72975 (1534..1554) - 61


gi|4544421|gb|AAD22330.1|AC006955_16[fasta] (AC006955) putative reverse transcriptase [Arabidopsis thaliana]
Length 631 aa

position (link: detail on the area) subject position direction score

75453..75268 (2..63) - 64
75282..75100 (60..120) - 91
74886..74260 (118..326) - 473
74262..74155 (327..362) - 111
73753..73562 (392..455) - 109
73418..73269 (502..551) - 100
73088..72924 (554..608) - 84


gi|4335738|gb|AAD17416|[fasta] (AC006248) putative reverse transcriptase [Arabidopsis thaliana]
Length 444 aa

position (link: detail on the area) subject position direction score

75858..75337 (44..217) - 336
74883..74737 (205..253) - 144
73786..73418 (263..385) - 317
73170..73051 (403..442) - 56


gi|2583130[fasta] (AC002387) putative reverse transcriptase [Arabidopsis thaliana]
Length 1374 aa

position (link: detail on the area) subject position direction score

76305..76198 (66..101) - 319
76194..76126 (101..123) - 39
76098..76051 (130..145) - 60
76008..75703 (159..260) - 100
75468..75238 (332..408) - 149
75186..74761 (423..564) - 278
74742..74488 (573..657) - 186
74436..74260 (676..734) - 82
74158..73838 (771..877) - 132
73753..73637 (906..944) - 64


gi|4538901|emb|CAB39638.1|[fasta] (AL049482) RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length 1274 aa

position (link: detail on the area) subject position direction score

76005..75703 (104..204) - 54
75468..75256 (273..343) - 138
75159..74779 (373..499) - 288
74742..74473 (514..603) - 212
74436..74305 (617..660) - 64
74158..73901 (712..797) - 143
73220..73101 (1017..1056) - 64


gi|2244803|emb|CAB10226.1|[fasta] (Z97336) reverse transcriptase-like protein [Arabidopsis thaliana]
Length 318 aa

position (link: detail on the area) subject position direction score

74823..74269 (5..189) - 64
74253..74155 (196..228) - 104
74071..73841 (240..316) - 215


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