information on T25K17
(49409..49329)
Direction: -
Frame: 2
ORF
49448..48834 (Met: 49262 49157 49037 48908 48890 48884)
LSSSSPRLFSTHTPFHTLQVAVKDSPCKVVYICRDAKDSLVSRWHIVCRSLNKEEDRTIL
ESMFESFCSGVCLFGPFWDHILSYWKASLEKPKQVLFMRYDEIKTDPHGQLKKLAEFLGC
PFSKEEEKNGSLNKILEMCSLPNLSSLEVNKTGKSINGIEYKNHFRKGIVGDWKNHLTPE
MGSKIDMIMKEKLKDYSEVWFENAL
GenBank annotation
49832..48831 T25K17.90
BLASTX cluster
49844..48834 cluster 9 5 hits for protein gene
BLASTN cluster
None
GENSCAN
49832..45207 gene model 11
Suboptimal exon
49428..48834 Term Phase: 2 Score: 0.142
49448..48834 Term Phase: 0 Score: 0.713
Grail
49302..48831 exon Phase: 2 Score: 74
49832..49449 exon Phase: 0 Score: 98
Exon-Intron boundary candidatates
Acceptor |
49004 [0.002] (0) |
49011 [0.029] (2) |
49076 [0.001] (0) |
49132 [0.021] (1) |
49242 [0.052] (2) |
49302 [0.096] (2) |
49347 [0.339] (2) |
49387 [0.002] (1) |
Donor |
48835 [0.74N/0.014] (2) |
48850 [0.016] (2) |
48855 [0.96N/0.295] (0) |
48905 [0.005] (1) |
49005 [0.006] (0) |
49124 [0.027] (1) |
49153 [0.95N/0.190] (2) |
49365 [0.024] (0) |
49429 [0.025] (2) |
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