information on T25K17    (49409..49329)

Direction: -

Frame: 2

ORF

    49448..48834  (Met: 49262 49157 49037 48908 48890 48884)
LSSSSPRLFSTHTPFHTLQVAVKDSPCKVVYICRDAKDSLVSRWHIVCRSLNKEEDRTIL
ESMFESFCSGVCLFGPFWDHILSYWKASLEKPKQVLFMRYDEIKTDPHGQLKKLAEFLGC
PFSKEEEKNGSLNKILEMCSLPNLSSLEVNKTGKSINGIEYKNHFRKGIVGDWKNHLTPE
MGSKIDMIMKEKLKDYSEVWFENAL

GenBank annotation

    49832..48831    T25K17.90

BLASTX cluster

    49844..48834    cluster 9    5 hits for protein gene

BLASTN cluster

    None

GENSCAN

    49832..45207    gene model 11
    Suboptimal exon

        49428..48834    Term    Phase: 2    Score: 0.142
        49448..48834    Term    Phase: 0    Score: 0.713

Grail

    49302..48831    exon    Phase: 2    Score: 74
    49832..49449    exon    Phase: 0    Score: 98

Exon-Intron boundary candidatates

Acceptor
49004 [0.002] (0) 49011 [0.029] (2) 49076 [0.001] (0) 49132 [0.021] (1)
49242 [0.052] (2) 49302 [0.096] (2) 49347 [0.339] (2) 49387 [0.002] (1)
Donor
48835 [0.74N/0.014] (2) 48850 [0.016] (2) 48855 [0.96N/0.295] (0) 48905 [0.005] (1)
49005 [0.006] (0) 49124 [0.027] (1) 49153 [0.95N/0.190] (2) 49365 [0.024] (0)
49429 [0.025] (2)

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