information on T25K17
(89680..89066)
Direction: -
Frame: 3
ORF
89899..89066 (Met: 89365)
RRRRRFRRTEFGVDNDEVNVSDDVDGNDSVDIDRHHHRRHRHRQQGREIDLDREFESILR
RRRRSSATILQLLQGIRAGIASEYESSDRDLLNQSAVVQGSTSLNQNRNNTSLSAIGDYF
VGSSLDHLLEHLADNDSIRHGSLPARKEVVDNLPTVKISESLQCSICLDDFDKGSEAKEM
PCKHKFHIRCIVPWLELHSSCPVCRYELPPDDETKVNPVRPRTRTLEINVSNENVEDDAR
NSNVSERRFSFPWPFSGLFSSSSSSSASASGSSHLGENS*
GenBank annotation
None
BLASTX cluster
89773..89066 cluster 17 1 hits for protein gene
BLASTN cluster
89338..88919 cluster 16 2 hits for EST
GENSCAN
89856..89066 gene model 21
Suboptimal exon
89689..89066 Term Phase: 0 Score: 0.170
Grail
89874..89063 exon Phase: 1 Score: 53
Shadow exon
89531..89063 exon Phase: 2 Score: 71
Exon-Intron boundary candidatates
| Acceptor |
| 89306 [0.011] (2) |
89328 [0.002] (1) |
89382 [0.007] (1) |
89413 [0.020] (0) |
| 89486 [0.69N/0.469] (2) |
89505 [0.016] (1) |
89526 [0.004] (1) |
89531 [0.037] (2) |
| 89605 [0.020] (0) |
89667 [0.076] (1) |
89680 [0.026] (0) |
89689 [0.104] (0) |
| 89723 [0.003] (2) |
89744 [0.029] (2) |
89774 [0.002] (2) |
89816 [0.015] (2) |
| Donor |
| 89067 [0.174] (2) |
89077 [1.00N/0.196] (1) |
89160 [0.114] (2) |
89174 [0.028] (0) |
| 89179 [0.003] (1) |
89216 [0.668] (0) |
89249 [0.293] (0) |
89258 [0.354] (0) |
| 89359 [0.024] (1) |
89438 [0.87N/0.061] (0) |
89467 [0.027] (1) |
89680 [0.013] (1) |
| 89767 [0.184] (1) |
89852 [0.084] (0) |
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Entrance