information on T25K17
(10392..7767)
Direction: -
Frame: 1
ORF
10404..7684 (Met: 10392 9858 9738 9597 9429 9045 8793 8730 8682 8610 8484 8190 8046 7722)
IKGVMESVSVETLSETGNSNDGQTNPELIDKHKKRSGKKKRKSRKLDNEVKDNDSHISSQ
IGNADEAFSSQEKKEGENEKSTSESQVRLSENLLSSLPAESCQRDSVSCEEPRATLHHTD
PISCEDSLPDDNRKGSSTKKSKRREKKKKKEDLSCEEKLLDEVEKITSEDQVHPPNNPLS
NGMVQERSGELTQDSCEKPGAAQICTDPNLSTCKDSLPDATNMTSSSKRKRNKRRDRNVL
KESGVDIGSTNAEVAVTDNTTTEAEGSRSMSIEENSVASVLINGCLKSKVDTVEQLDGTD
VQINETVFQTQSTKAKKRKKKKTKTMEACDPLGNTLPTSTESGPVECVENNDGNKEKDGN
TEVKEDVREVKYDTISEAEGSKSTTKEEKSVASVVISSCLKSKDDTVEQKECTDVNISET
VAQTQDPKAKRRKKRKTETIEVCDPLGNTLSTSMKSGPVERVENNDGNGGRELISYSASQ
TENYVNGEENGIQNLGKTKEKETDENTEVKEDVLGAGVCDVRSKKRKGKKKKTSSADMEV
FEPSGSVECLLNQSNEKDMQNFDGNAGQEFGGEDMTIKIEKSATREKSGVQKSGKRKEMT
KDKNIESNQDALDAEGVSDDGHKREKRKIKNKTNCESVATMDSESVQSLLYQSNGEGVKN
YEGNADGEIASKDLASNIEDSATKGESVQDDKNTKKRKKDRKGEVDQDAKGAEGVSTVEV
TTKKSKKKKNLLDHKTDNMEEDSIKKNEKKEEVDQNDLGAEGVSKVEVKTKKSKRKKNSL
DHKTDDMEGKDDVSLPRKDEEPEFDREKLETSLSSSVLIQNDNVAQGVISSETGDVPRCT
CKAQRTRKLVIFDLNGILADIVQGFTGTFLPDGKVSYRSGKKESISTSLLVSCFMFLLLQ
SNFFVLL
GenBank annotation
None
BLASTX cluster
10392..6586 cluster 3 1 hits for protein gene
BLASTN cluster
8284..6346 cluster 3 2 hits for EST
7973..7811 cluster 4 1 hits for EST
GENSCAN
10392..6817 gene model 3
Suboptimal exon
10392..7806 Init Phase: 0 Score: 0.299
Grail
10392..7681 exon Phase: 0 Score: 86
9429..7681 exon Phase: 0 Score: 99
9994..7681 exon Phase: 2 Score: 56
Exon-Intron boundary candidatates
| Acceptor |
| 7704 [0.432] (0) |
7766 [0.004] (1) |
7771 [0.019] (2) |
7790 [0.106] (1) |
| 7805 [0.918] (1) |
7815 [0.81N/0.208] (0) |
7826 [0.88N/0.027] (1) |
7910 [0.268] (1) |
| 7987 [0.018] (2) |
8014 [0.039] (2) |
8120 [0.009] (1) |
8123 [0.115] (1) |
| 8139 [0.005] (0) |
8283 [0.063] (0) |
8417 [0.015] (1) |
8435 [0.004] (1) |
| 8558 [0.001] (1) |
8561 [0.003] (1) |
8577 [0.78N/0.460] (0) |
8745 [0.017] (0) |
| 8771 [0.002] (1) |
8795 [0.007] (1) |
8855 [0.423] (1) |
9065 [0.001] (1) |
| 9129 [0.001] (0) |
9151 [0.003] (2) |
9164 [0.004] (1) |
9185 [0.021] (1) |
| 9195 [0.001] (0) |
9211 [0.034] (2) |
9266 [0.005] (1) |
9272 [0.001] (1) |
| 9407 [0.027] (1) |
9471 [0.015] (0) |
9506 [0.003] (1) |
9515 [0.001] (1) |
| 9527 [0.019] (1) |
9537 [0.002] (0) |
9647 [0.006] (1) |
9658 [0.005] (2) |
| 9730 [0.001] (2) |
9749 [0.002] (1) |
9785 [0.019] (1) |
9810 [0.001] (0) |
| 9825 [0.019] (0) |
9839 [0.003] (1) |
9844 [0.001] (2) |
9917 [0.001] (1) |
| 10002 [0.002] (0) |
10006 [0.004] (2) |
10016 [0.009] (1) |
10046 [0.002] (1) |
| 10073 [0.001] (1) |
10085 [0.002] (1) |
10106 [0.71N/0.124] (1) |
10211 [0.014] (1) |
| 10228 [0.012] (2) |
10231 [0.022] (2) |
10361 [0.003] (1) |
10376 [0.007] (1) |
| 10397 [0.004] (1) |
| Donor |
| 7704 [0.010] (1) |
7735 [0.92N/0.953] (0) |
7767 [1.00N/0.987] (1) |
7788 [0.93N/0.012] (1) |
| 7806 [0.126] (1) |
7858 [0.041] (0) |
7862 [0.004] (2) |
7884 [0.92N/0.033] (1) |
| 7973 [0.008] (2) |
8104 [0.028] (0) |
8110 [0.009] (0) |
8248 [0.093] (0) |
| 8259 [0.022] (1) |
8263 [0.008] (0) |
8265 [0.049] (1) |
8394 [0.196] (1) |
| 8436 [0.045] (1) |
8474 [0.029] (2) |
8478 [0.076] (1) |
8559 [0.004] (1) |
| 8619 [0.027] (1) |
8788 [0.023] (0) |
8845 [0.042] (0) |
8854 [0.018] (0) |
| 8856 [0.041] (1) |
8934 [0.007] (1) |
8953 [0.003] (0) |
8970 [0.009] (1) |
| 9082 [0.87N/0.135] (0) |
9366 [0.007] (1) |
9368 [0.029] (2) |
9538 [0.007] (0) |
| 9646 [0.004] (0) |
9819 [0.009] (1) |
9840 [0.086] (1) |
9845 [0.125] (2) |
| 9856 [0.024] (0) |
9861 [0.084] (1) |
10258 [0.015] (0) |
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