information on T25K17    (71119..71829)

Direction: +

Frame: 1

ORF

    70909..71946  (Met: 70963 71119 71542 71575 71599 71611 71623 71722 71890)
FGYLFILKSFIVWFCSVDMDIISQCPDHLLLRILSFIPTKDVIVTSLLSKRWGSLWRWVP
KLEYDFTRQNMRFVKFVYRSLLQNNAPVLESLHLKNIILYAECRTVDIGGWIDIAVSRRV
RELEISINCSDEKFRLPSSLYTCGTLESFILTIKHCHLVDVPLAVCLPSLKKLHLRCIGW
AYNATLLRLISGCTNLEELRLARPDDDGDYIMIHEAGSTIDYMSIFERRYMFEFMFDQMF
GKGSSNGINAPLKYFSISNNYRIHNFRGIEKMPDWVEARIAVTGGSHKYLKEITYAKGLY
VCLSVSEVITNLVIYLHIYILLFLSNNMTDVETGYESLRHDLPHAC

GenBank annotation

    70963..72425    T25K17.160

BLASTX cluster

    None

BLASTN cluster

    None

GENSCAN

    71119..72422    gene model 16
    Suboptimal exon

        70963..71829    Init    Phase: 0    Score: 0.286
        71119..71808    Init    Phase: 0    Score: 0.141

Grail

    71119..71269    exon    Phase: 0    Score: 80
    71399..71560    exon    Phase: 1    Score: 35
    71623..71829    exon    Phase: 0    Score: 85

Exon-Intron boundary candidatates

Acceptor
70933 [0.001] (0) 70956 [0.96N/0.685] (2) 70977 [0.002] (2) 71061 [0.003] (2)
71145 [0.87N/0.975] (2) 71158 [0.026] (0) 71228 [0.003] (1) 71255 [0.125] (1)
71313 [0.012] (2) 71325 [0.002] (2) 71399 [0.003] (1) 71472 [0.002] (2)
71558 [0.002] (1) 71635 [0.001] (0) 71883 [0.037] (2) 71909 [1.00N/0.542] (1)
Donor
71265 [0.017] (0) 71269 [0.023] (1) 71400 [0.86N] (0) 71435 [0.012] (2)
71560 [0.019] (1) 71594 [0.90N/0.833] (2) 71635 [0.005] (1) 71743 [0.005] (1)
71751 [0.007] (0) 71771 [0.010] (2) 71808 [0.88N/0.125] (0) 71829 [1.00N/0.860] (0)
71844 [0.015] (0) 71908 [0.004] (1)

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