information on T25K17
(71119..71829)
Direction: +
Frame: 1
ORF
70909..71946 (Met: 70963 71119 71542 71575 71599 71611 71623 71722 71890)
FGYLFILKSFIVWFCSVDMDIISQCPDHLLLRILSFIPTKDVIVTSLLSKRWGSLWRWVP
KLEYDFTRQNMRFVKFVYRSLLQNNAPVLESLHLKNIILYAECRTVDIGGWIDIAVSRRV
RELEISINCSDEKFRLPSSLYTCGTLESFILTIKHCHLVDVPLAVCLPSLKKLHLRCIGW
AYNATLLRLISGCTNLEELRLARPDDDGDYIMIHEAGSTIDYMSIFERRYMFEFMFDQMF
GKGSSNGINAPLKYFSISNNYRIHNFRGIEKMPDWVEARIAVTGGSHKYLKEITYAKGLY
VCLSVSEVITNLVIYLHIYILLFLSNNMTDVETGYESLRHDLPHAC
GenBank annotation
70963..72425 T25K17.160
BLASTX cluster
None
BLASTN cluster
None
GENSCAN
71119..72422 gene model 16
Suboptimal exon
70963..71829 Init Phase: 0 Score: 0.286
71119..71808 Init Phase: 0 Score: 0.141
Grail
71119..71269 exon Phase: 0 Score: 80
71399..71560 exon Phase: 1 Score: 35
71623..71829 exon Phase: 0 Score: 85
Exon-Intron boundary candidatates
Acceptor |
70933 [0.001] (0) |
70956 [0.96N/0.685] (2) |
70977 [0.002] (2) |
71061 [0.003] (2) |
71145 [0.87N/0.975] (2) |
71158 [0.026] (0) |
71228 [0.003] (1) |
71255 [0.125] (1) |
71313 [0.012] (2) |
71325 [0.002] (2) |
71399 [0.003] (1) |
71472 [0.002] (2) |
71558 [0.002] (1) |
71635 [0.001] (0) |
71883 [0.037] (2) |
71909 [1.00N/0.542] (1) |
Donor |
71265 [0.017] (0) |
71269 [0.023] (1) |
71400 [0.86N] (0) |
71435 [0.012] (2) |
71560 [0.019] (1) |
71594 [0.90N/0.833] (2) |
71635 [0.005] (1) |
71743 [0.005] (1) |
71751 [0.007] (0) |
71771 [0.010] (2) |
71808 [0.88N/0.125] (0) |
71829 [1.00N/0.860] (0) |
71844 [0.015] (0) |
71908 [0.004] (1) |
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Entrance