information on T25K17    (20198..21053)

Direction: +

Frame: 3

ORF

    20133..21053  (Met: 20157 20643 20682 20694 20835 20985 21033)
QIFYFRYLMHCIYRTVYLFHYRFDRDLRWRTGVKIVPIHCDSSNHFQITPEALESAYQTA
RDANIRVRGVLITNPSNPLGATVQKKVLEDLLDFCVRKNIHLVSDEIYSGSVFHASEFTS
VAEIVENIDDVSVKERVHIVYSLSKDLGLPGFRVGTIYSYNDNVVRTARRMSSFTLVSSQ
TQHMLASMLSDEEFTEKYIRINRERLRRRYDTIVEGLKKAGIECLKGNAGLFCWMNLGFL
LEKKTKDGELQLWDVILKELNLNISPGSSCHCSEVGWFRVCFANMSENTLEIALKRIHEF
MDRRRRF

GenBank annotation

    19417..21056    T25K17.10

BLASTX cluster

    19417..21077    cluster 4    108 hits for protein gene

BLASTN cluster

    20294..21298    cluster 5    6 hits for EST

GENSCAN

    17335..21053    gene model 4

Grail

    20157..21056    exon    Phase: 0    Score: 99

Exon-Intron boundary candidatates

Acceptor
20198 [1.00N/0.995] (2) 20207 [0.145] (2) 20216 [0.001] (2) 20239 [0.005] (1)
20258 [0.002] (2) 20274 [0.081] (0) 20446 [0.023] (1) 20518 [0.001] (1)
20558 [0.002] (2) 20635 [0.014] (1) 20642 [0.001] (2) 20673 [0.003] (0)
20732 [0.002] (2) 20779 [0.001] (1) 20794 [0.003] (1) 20812 [0.001] (1)
20907 [0.003] (0) 20969 [0.001] (2) 21018 [0.001] (0)
Donor
20378 [0.010] (0) 20390 [0.222] (0) 20417 [0.008] (0) 20524 [0.055] (2)
20758 [0.88N/0.133] (2) 20954 [0.235] (0) 20962 [0.009] (2) 20969 [0.84N/0.201] (0)
21049 [0.113] (2)

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