information on T10M13    (87548..87811)

Direction: +

Frame: 2

ORF

    86906..89779  (Met: 86909 86915 86936 86960 86963 87737 87875 87878 87893 88649 89057 89105 89564 89573 89603 89621 89684 89717)
YMTMDSEGVLMPLVHEHLMMPWNDLRKGDCCGLSKAVSVGYYCKSCDFFAHKKCGESSEF
IQHPSHPNHTLQLRSSEGCNSCNLCGRTISDLFYRCDLCDFDVDLYCAKYPPPEVIDIPE
THHHKLNLHKELIEFNCDAKCGKITGAEFPYVCYECQLPFHVDCVWRPSELKHPSEVNHS
YHSLHPLKLLSGQLPDNCDGKCRLCARKIDDRLFYHCSPCNFTLDLRCVLNPPQQSLLNL
KAHDHQLTLLPRLLSFTCNACGLNGDRSPYTCVQCDFMIHQDCLDLPRVININQHDHRVS
RTSVPGVGNSKGVLLPWFHRKHIMMPWNDMRKGDCCGSLESVTDGFYCKSCDIFIHKKCG
ESSGIIDHSSHPDHTLELNRYPNKSCNLCGRSKGVNVCYRCDHCYYQLDLYCAKYPPPEF
IDIPETHHHKLTLLKERIEFDCDAKCGETGDGFAYKCPECDLFFHVDCVWHPPEVNHPLE
VNHSYHPWHPLKLHTGQPPHYSDGTCRLCARNIDDRLFYHCSPCNFTLDLRCVLNPPPQS
LLNLKAHDHQLILLPRLRSFTCNACGLSGDRSPYICIQCDFMIHQDCLDLPRLINVNRHD
HRVSRTSVLGVVNSVCGVCHQKVDWTCGGFSCQRCSSYVVHSKCATRRDVWNGKELEGVP
EEIEDIEPYVVIDDNTIQHFSHKEHYLRLHVNDVLCNDNKRCKACTHPIFLQSFYSCMDC
DFLLHQNCAGFPRMKRHVLHNERLTLVTNETKLFQCAPCDRWSNGFRYQHGYKSLDLQCG
SISEPFVHPSHPDHPLYHTLLDGRNEICDGCKKSWYYVLSCIEDDCRFVLCFKCLTLPQV
VKHRVDDDPLLLCYGEKACGKYWCDICEKETNPETWFYTCKDHQSSMHTMCVLGDSVGIM
PKSTIMGWYKYYEVVLNNSISRPVCEMCKSRCIFPTIMKILEASNEYVCSLACVLERG

GenBank annotation

    86229..89782    T10M13.17

BLASTX cluster

    86915..95613    cluster 12    27 hits for protein gene

BLASTN cluster

    None

GENSCAN

    86229..89779    gene model 17
    Suboptimal exon

        86915..89779    Sngl    Phase: 0    Score: 0.256

Grail


    None

Exon-Intron boundary candidatates

Acceptor
86906 [0.93N/0.064] (0) 87040 [0.003] (2) 87480 [0.012] (1) 87839 [0.002] (0)
87865 [0.093] (2) 87955 [0.001] (2) 88078 [0.008] (2) 88086 [0.001] (1)
88326 [0.002] (1) 88344 [0.001] (1) 88392 [0.003] (1) 88542 [0.006] (1)
88769 [0.019] (0) 88772 [0.052] (0) 88805 [0.067] (0) 88807 [0.001] (2)
88816 [0.003] (2) 88846 [0.025] (2) 88849 [0.001] (2) 88923 [0.004] (1)
88948 [0.002] (2) 89053 [0.005] (2) 89113 [0.004] (2) 89171 [0.010] (0)
89188 [0.037] (2) 89206 [0.147] (2) 89240 [0.004] (0) 89386 [0.002] (2)
89513 [0.005] (0) 89550 [0.001] (1) 89598 [0.218] (1) 89676 [0.013] (1)
89723 [0.001] (0) 89760 [0.008] (1)
Donor
86987 [0.284] (1) 87013 [0.040] (0) 87023 [0.004] (1) 87140 [0.033] (1)
87247 [0.016] (0) 87314 [0.003] (1) 87358 [0.74N/0.040] (0) 87433 [0.95N/0.686] (0)
87479 [0.94N/0.328] (1) 87677 [0.005] (1) 87728 [0.008] (1) 88077 [0.005] (2)
88085 [0.132] (1) 88093 [0.038] (0) 88260 [0.055] (2) 88283 [0.004] (1)
88345 [0.92N/0.064] (0) 88391 [0.99N/0.564] (1) 88610 [0.005] (1) 88747 [0.015] (0)
88771 [0.006] (0) 88790 [0.027] (1) 88915 [0.028] (0) 89054 [0.011] (1)
89205 [0.095] (2) 89349 [0.057] (2) 89483 [0.063] (1) 89493 [0.004] (2)
89543 [0.005] (1) 89561 [0.011] (1) 89624 [0.039] (1) 89628 [0.74N/0.052] (2)

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