information on L73G19    (42195..41563)

Direction: -

Frame: 3

ORF

    42441..41362  (Met: 42324 41769 41622 41607 41439)
RVLLLSKGTIVYHGRLDLLEAFLLSKGFTVPSQLNSLEYAMEILQNIRDPYENANIALPD
HCPESKKQNQKQSIVRYKSSRITEISLLSSRFWKIIYRTRQLLLTNILESLVVGLVLGTI
YLNIGTGKEGIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILA
NTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPN
YIAGTSSVTILLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALLINEYSCLHNKC
LVWFEEASVNSCLVTGGDVLDKNGLHERQRWFNVYMLLGFFVLYRVLCFLVLLKRVSGSK
R*

GenBank annotation

    None

BLASTX cluster

    42444..41362    cluster 10    75 hits for protein gene

BLASTN cluster

    None

GENSCAN

    42366..38428    gene model 9
    Suboptimal exon

        42324..41496    Init    Phase: 0    Score: 0.277

Grail

    41769..41359    exon    Phase: 0    Score: 85
    42107..41359    exon    Phase: 1    Score: 40

Exon-Intron boundary candidatates

Acceptor
41380 [0.030] (2) 41429 [0.004] (1) 41495 [0.002] (1) 41512 [0.002] (2)
41648 [0.003] (1) 41831 [0.69N/0.457] (1) 42049 [0.002] (2) 42092 [0.250] (1)
42107 [0.004] (1) 42172 [0.344] (2) 42208 [0.001] (2) 42266 [0.015] (1)
42309 [0.012] (0) 42345 [0.007] (0) 42366 [0.002] (0)
Donor
41429 [0.024] (2) 41435 [0.003] (2) 41453 [0.049] (2) 41456 [0.81N/0.388] (2)
41496 [0.004] (1) 41537 [0.021] (2) 41542 [0.007] (0) 41600 [0.012] (2)
41621 [0.005] (2) 41667 [0.008] (1) 41791 [0.045] (0) 42173 [0.018] (2)
42252 [0.81N/0.050] (1)

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