information on L73G19    (30176..29961)

Direction: -

Frame: 1

ORF

    30311..29094  (Met: 30263 30221 30008 29456 29444 29225)
SVVSFRRRSPKKKVKEMERLVSGETTTSSNMKKKKKKVSSTTNPSLPDDLVLVIIARVSI
LYYPILSLVSKSFRSLLASPELYKVRSLLGRRESRLYVCINMYSYKNGPSWFTLCRKPDR
TTTSSNKEEDRSSGYVLARIPIPHSPLTQRYSLAAVGSNIYNIGVTRYHHLTSSSVWVLD
CRSHTWRQAPSLPVELFRVSVSVLDQKIYVAGLHQEDGSDSLKNSVTVLDTETQVSDRVA
IPCSVSQGKEIFISTSVGGKVNLVTGRKVVDYNPVEGSWEEVGDTMCEFMFSKCFCVVGN
VLYSCAIDRVFRWYDTEVRTWRNLECLIGGRLPKLSPRAFVSLADYGGKLAVFWNQGVGD
WQMLWCAVIALERRNTCEILGNVEWSDHVLHVPKIRSYYNALSATL

GenBank annotation

    30263..29091    L73G19.90

BLASTX cluster

    30176..29094    cluster 6    34 hits for protein gene

BLASTN cluster

    None

GENSCAN

    37450..24398    gene model 8
    Suboptimal exon

        30278..29094    Term    Phase: 0    Score: 0.849

Grail

    29376..29091    exon    Phase: 2    Score: 64
    29680..29091    exon    Phase: 1    Score: 58
    29982..29091    exon    Phase: 2    Score: 32
    30263..29091    exon    Phase: 0    Score: 84

Exon-Intron boundary candidatates

Acceptor
29209 [0.019] (1) 29225 [0.012] (0) 29242 [0.065] (1) 29264 [0.001] (0)
29286 [0.003] (2) 29326 [0.015] (1) 29376 [0.86N/0.003] (2) 29507 [0.001] (0)
29580 [0.002] (2) 29617 [0.012] (1) 29642 [0.001] (0) 29662 [0.002] (1)
29677 [0.803] (1) 29680 [0.003] (1) 29787 [0.012] (2) 29811 [0.005] (2)
29856 [0.001] (2) 29864 [0.005] (0) 30054 [0.079] (2) 30059 [0.004] (0)
Donor
29218 [0.006] (2) 29361 [0.389] (0) 29374 [0.024] (2) 29453 [0.474] (1)
29455 [0.81N/0.171] (2) 29469 [0.611] (0) 29483 [0.644] (1) 29508 [0.019] (0)
29532 [0.092] (0) 29610 [0.362] (0) 29712 [0.004] (0) 29733 [0.033] (0)
29847 [0.84N/0.031] (0) 29912 [0.006] (1) 29920 [0.388] (2) 29939 [0.009] (1)
30021 [0.011] (0) 30055 [0.204] (2) 30060 [0.93N/0.144] (0) 30156 [0.005] (0)
30162 [0.015] (0) 30201 [0.029] (0) 30252 [0.007] (0) 30256 [0.033] (2)

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