information on F19F18    (86516..86725)

Direction: +

Frame: 2

ORF

    85337..87037  (Met: 85445 85955 86102 86120 86186 86234 86264 86408 86501 86666 86951 86978)
VEPQVTLRKSVRVISKPSYLDDYVLLASIECERLLLMINEEPWDYNEAKELQEWKKACVE
EIASITKNHTWDLVDLPIGAKPIGLKWVFKLKRNSDGSVNKHKARLVAKGYVQRHGIDFD
EVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELKEVVYVSQPEGFVIGGSEDK
VYKLNKALYGLKQAPRAWNNKLNKILMELKFTKCSKEPSLYCRRDKDELLVVVVYVDDLL
VTGSNLQVILEFKEEMAKKFEMSDLGKLTYYLGIEVFQHEGGIMLKQERYANKILEETKM
DDCNAVQIPMDANLKLSKAQEEKNIDEKEYRRNIGCLRYLLHTRPDLSYCVGVLSRYMHE
PKESHGAALKQILRYLRGTQSFGLCFKRMNKTELVGFSDSSHNVDEDDGRSTTGHIFYLN
DCPITWCSQKQETVALSSCEAEFMAATEAAKQAVWLQELLEEIVGKTCKQVLILIDNKSA
IALTKNPVFHGRSKHIHKRYHFIRECVANEQVEVEHVPGTEQRADILTKALGRIKFKEMR
DLVGVQDMTKCSFKLKGENVGVSLKLT

GenBank annotation

    None

BLASTX cluster

    82913..87034    cluster 9    89 hits for protein gene

BLASTN cluster

    None

GENSCAN

    85445..87037    gene model 23

Grail

    84557..85336    exon    Phase: 0    Score: 78
    85445..86457    exon    Phase: 0    Score: 59
    86514..87040    exon    Phase: 1    Score: 80

Exon-Intron boundary candidatates

Acceptor
85341 [0.007] (1) 85458 [0.002] (1) 85755 [0.038] (1) 85848 [0.005] (1)
85860 [0.007] (1) 86008 [0.002] (2) 86154 [0.073] (1) 86163 [0.004] (1)
86178 [0.139] (1) 86258 [0.020] (0) 86401 [0.77N/0.003] (2) 86404 [0.86N/0.078] (2)
86514 [0.020] (1) 86523 [0.005] (1) 86530 [0.009] (2) 86539 [0.094] (2)
86658 [0.004] (1) 86679 [0.004] (1) 86871 [0.001] (1) 86992 [0.003] (2)
Donor
85366 [0.034] (0) 85506 [0.006] (2) 85664 [0.004] (1) 85682 [0.004] (1)
86153 [0.013] (1) 86202 [0.524] (2) 86457 [0.830] (2) 86567 [0.034] (1)
86576 [0.014] (1) 86695 [0.009] (0) 86738 [0.153] (1) 86832 [0.074] (2)
87019 [0.062] (0)

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